Please disregard my note. As Lori has indicated formal review must proceed before reinclusion.
On Thu, Feb 11, 2021 at 9:51 AM Vincent Carey <st...@channing.harvard.edu> wrote: > EWCE may need to be reviewed for reinclusion. I tried to check on R-devel > with the repo you mentioned. Do you > have a current personal repo that passes check with Bioc 3.13/R-devel? > > Quitting from lines 220-223 (EWCE.Rmd) > Error: processing vignette 'EWCE.Rmd' failed with diagnostics: > Invalid attribute(s): percentage_gc_content > Please use the function 'listAttributes' to get valid attribute names > --- failed re-building ‘EWCE.Rmd’ > > On Thu, Feb 11, 2021 at 9:41 AM Murphy, Alan E <a.mur...@imperial.ac.uk> > wrote: > >> Hi all, >> >> My apologies in advance if this is not the correct mailing list for this >> question, regarding development to the EWCE Bioconductor package. >> >> I work as part of Dr. Nathan Skene's group who submitted the package EWCE< >> https://bioconductor.riken.jp/packages/3.5/bioc/html/EWCE.html#since> to >> Bioconductor some years ago. The package fell out of maintenance and as >> such was deprecated from Bioconductor 3.6. We are working to update and >> hopefully, reinstate the package but are running into issues when pushing >> any changes to Bioconductor. We have been following instructions here< >> http://bioconductor.org/developers/how-to/git/sync-existing-repositories/> >> to try and sync our Github updates with the Bioconductor version but can't >> seem to push the new, merged version to Bioconductor. >> >> To test the cause of the issue, we cloned the repo: >> >> git clone https://git.bioconductor.org/packages/EWCE >> >> And updated the version of the package in the DESCRIPTION file and tried >> pushing the change, using Nathan's account which is associated with the >> package. However, we still can't push to Bioconductor, getting the error: >> >> >> -bash-4.2$ git push origin master >> FATAL: W any packages/EWCE n.skene DENIED by fallthru >> (or you mis-spelled the reponame) >> fatal: Could not read from remote repository.Please make sure you have >> the correct access rights >> and the repository exists. >> >> It appears it does recognise Nathan's account but doesn't think he has >> access rights to the repo. It is worth noting that EWCE is also not listed >> on his account's webpage. >> >> We are wondering if this issue is caused by EWCE being deprecated and if >> so, what are the necessary steps to reinstate it? >> >> Kind regards, >> Alan. >> >> Alan Murphy >> Bioinformatician >> Neurogenomics lab >> UK Dementia Research Institute >> Imperial College London >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > -- The information in this e-mail is intended only for the ...{{dropped:18}} _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
