When a package is defuncted and removed from Bioconductor, push access is no longer granted.
The package has been out of Bioconductor for several releases and will have to be re-submitted and undergo a formal review through the submission tracker. github.com/Bioconductor/Contributions/issues As stated in the package lifecycle documentation: bioconductor.org/developers/package-end-of-life/ Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Murphy, Alan E <a.mur...@imperial.ac.uk> Sent: Thursday, February 11, 2021 7:46 AM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Cc: Nathan Skene <nathan.sk...@gmail.com> Subject: [Bioc-devel] EWCE Bioconductor package Hi all, My apologies in advance if this is not the correct mailing list for this question, regarding development to the EWCE Bioconductor package. I work as part of Dr. Nathan Skene's group who submitted the package EWCE<https://secure-web.cisco.com/1sx525Q-bQneoyLW4yHBUObMMrMG0LTbnZfrXekcT9C3BUwLeiiZ9iUPNIP-wKORuLgEp6AX2pgrDH2BBsmWGAiePOSu7efUtmKDcygCUcXFt2dsj0kYFmm-Xlos9hs37021atLamsnQEfbtqOdHYQz2wtWoggI-WtzwASwzYWLnR2Q44tmO3ojckLnFzUnqLpdpBLzHMntnC_tTv_DU2Jov-UHb1cf7L_7x05_6M_651LzOaG4OLWsX53w9rIvrAvS9bf4X6nA48KRJMZEevLhxMQWSqv5myH6oHowcatlu6VbPseluKHyT3wJcvZpmK/https%3A%2F%2Fbioconductor.riken.jp%2Fpackages%2F3.5%2Fbioc%2Fhtml%2FEWCE.html%23since> to Bioconductor some years ago. The package fell out of maintenance and as such was deprecated from Bioconductor 3.6. We are working to update and hopefully, reinstate the package but are running into issues when pushing any changes to Bioconductor. We have been following instructions here<http://secure-web.cisco.com/1ZqSdbN61YyYYV3KiXShkC0ceYqoBoDgeVozbANodfbwCLpGUwnvwfxWZKUIOWHfgBFcDqV8B2KJEt_6IqgbzubjUlGoKfK2aaEMhqyPxaLLng389G_UMR3LkScYMVLYOz-d8x4yO5F27ldVbM4ctNzBXwOtPck3SKtY34 RBPiL0vDXbn4Gn2EiCnvbgx8KQS4gAbh02HEvZB2wylI0AHFo9KwA2laZIcRAlIuLQ8VUVsd2L1EjOcWrQ1cDRJRZjvp32MQ4Zg94DIq_Kwk9krb8ERgnIdwJPawv7WgslW4Msjll2oBWFfEvaMzfl8aSwG/http%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Fsync-existing-repositories%2F> to try and sync our Github updates with the Bioconductor version but can't seem to push the new, merged version to Bioconductor. To test the cause of the issue, we cloned the repo: git clone https://secure-web.cisco.com/12B2YQDIm_cMn-0q1F-RByiCbf2gIjefbocAxQ9Ufhu3GxJ8AD8wnMFMiOK4CWqYfcl6TSMUdYfIQ1xHqzHRiGIhDC-LBJbCTZmHw8F3rT59gUPfbo3OYZJmZyqctSYPHUMMNLElFxKh7xyf2YjWTCBkZhgDaT9F9XobPWAZpVapV_6QGSOvvgYHk8FM_EqfYzmkzKQEUaU8vaK8iLfiEBSYzKn_FD6zL0MRyVny3Ibw7C7acqKfKHgSNHuWIEwKhH09SJvFMmXlvyp_JYezufnoQ4D5FAi8wEiy1sqRhu-1p5CcjKrd3nke_-SbFOsTn/https%3A%2F%2Fgit.bioconductor.org%2Fpackages%2FEWCE And updated the version of the package in the DESCRIPTION file and tried pushing the change, using Nathan's account which is associated with the package. However, we still can't push to Bioconductor, getting the error: -bash-4.2$ git push origin master FATAL: W any packages/EWCE n.skene DENIED by fallthru (or you mis-spelled the reponame) fatal: Could not read from remote repository.Please make sure you have the correct access rights and the repository exists. It appears it does recognise Nathan's account but doesn't think he has access rights to the repo. It is worth noting that EWCE is also not listed on his account's webpage. We are wondering if this issue is caused by EWCE being deprecated and if so, what are the necessary steps to reinstate it? Kind regards, Alan. Alan Murphy Bioinformatician Neurogenomics lab UK Dementia Research Institute Imperial College London [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1S8eXPzF-jxvlwhjtZez-D92rudcHSCDZpRzcugxPrN0UPog2pWEs0oQ8GuWUo5kTHyctyA8jR_vLzYw_LaffkoZDIAlWNkkbQwPO-gNeYkeAsACtJf75Cc0rU_O_troUSPrdKmYPQMKZ1l75FJxJZJEt2LxfaK7kly2P3cDpiDw5syIThzWZcgh744-IUNeGNpuEsASzGblh5Od5fShnq5IIJUe7-ymOluqJrk_8fXiJDvoKeSSxry_waHX41cDU0v03NaBtFPVlIQEKAAgk055AfOlDYjes0KZEyqIjmzHq5w6NVmpz_O8RqoztPnUZ/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
