Re: [Bioc-devel] Fwd: BioC 3.12 coming soon, package a4 and a4Base need your attention!

2020-10-22 Thread David Jimenez-Morales
Thanks a lot, Martin, I'll take care of that. I guess that's a new function in that package (because it always worked before) And yes, I am planning to start removing dependencies. artMS has one function that tries to help the very inexperienced R users by doing a lot of things for them out of th

Re: [Bioc-devel] SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING

2020-10-22 Thread Kern, Lori
We have completed the migration and posting may resume. Please post any issues/bugs to the Support Site Code Base at github.com/Bioconductor/support.bioconductor.org/issues Thank you Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics &

[Bioc-devel] SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING

2020-10-22 Thread Kern, Lori
In roughly 30 minutes we will begin an update of support site (support.bioconductor.org) . The support site will temporarily be down and unreachable. Once the upgrade is complete, it will be back online and we will let you know when you can begin posting again. Thank you for your patience and

Re: [Bioc-devel] MOGAMUN not available in the devel's repository

2020-10-22 Thread Kern, Lori
It normally takes a day or two from that point to be reflected in the build report. I can verify it was added to the software manifests for nightly builds two days ago. It probably was too late to make yesterdays build but should be present on today's build report (generally posted around 1 PM

[Bioc-devel] MOGAMUN not available in the devel's repository

2020-10-22 Thread Elva NOVOA
Hello, I received an email on Tuesday where I was notified that my package (MOGAMUN) was accepted and that was going to be included in the nightly 'devel' build, but I cannot find it. My GitHub repository has a public ssh key (https://github.com/elvanov.keys) so normally I had nothing else to do.

Re: [Bioc-devel] Fwd: BioC 3.12 coming soon, package a4 and a4Base need your attention!

2020-10-22 Thread Martin Morgan
Your NAMESPACE has import(ComplexHeatmap) ... import(pheatmap) and both packages have a function pheatmap -- the import from ComplexHeatmap is being replaced by the import from pheatmap. In other places your NAMESPACE has lines like import(seqinr, except = c(zscore, count, a)) so you'd like t