Good day,
> I have DNA data. Is there any other solution rather than Rsubread which is
> extremely slow?
How much of it do you have? If it's a large size, such as whole genome
sequencing, then it would take longer than an RNA-seq experiment regardless of
the algorithm you use. I have used Rsub
I think that generally Rsubread is 'fast' so you might make sure that
there are not obvious problems, e.g., aligning reads to the wrong
reference; maybe Wei Shi will chime in.
Martin
On 11/24/2017 09:57 AM, Ioannis Vardaxis wrote:
Hi,
I tried the Rsubread package you suggested and the mappin
On 11/25/2017 04:39 AM, 朱莉娜 wrote:
Hi all,
I have submitted a new software package(HTSanalyzeR2) to bioconductor and
has got some error. So I need to use the devel version of Bioconductor and
the development version of R to fix any problems before the next commit.
But I came across some puzzles
The missing CRAN packages on tokay2 is a known issue:
https://stat.ethz.ch/pipermail/bioc-devel/2017-November/012265.html
https://stat.ethz.ch/pipermail/bioc-devel/2017-November/012340.html
The XML landing page does say 'orphaned' but I don't think there are plans to
remove it from CRAN any time
Hi Lluís,
thanks for your inquiry. The work on restoring the coverage badges is
ongoing. As you pointed it out, due to the deprecation of the GitHub mirror
we cannot use the previous approach based on codecov anymore. Nevertheless,
the badges will be reintroduced soon. They will contain an up-to-d
Hi all,
Since Bioconductor has moved to git, packages don't have the coverage
badge. This was supposed to have been corrected some weeks ago (
https://stat.ethz.ch/pipermail/bioc-devel/2017-October/012142.html).
However it wasn't
It seems that badge relied on Github mirror to calculate the covera
Hi all,
I have submitted a new software package(HTSanalyzeR2) to bioconductor and
has got some error. So I need to use the devel version of Bioconductor and
the development version of R to fix any problems before the next commit.
But I came across some puzzles in doing so, when I use the developme
