On Thu, Feb 7, 2013 at 8:48 PM, Dan Tenenbaum wrote:
> Hi Norman,
>
>
> On Thu, Feb 7, 2013 at 6:59 PM, Norman Pavelka
> wrote:
>> Hi,
>>
>> I am sure many of you may have noticed already, but basically every
>> package in Bioc-devel that has a vignette (i.e. almost every package)
>> is currentl
Hi Norman,
On Thu, Feb 7, 2013 at 6:59 PM, Norman Pavelka wrote:
> Hi,
>
> I am sure many of you may have noticed already, but basically every
> package in Bioc-devel that has a vignette (i.e. almost every package)
> is currently issuing warnings in R CMD check:
> http://www.bioconductor.org/che
Hi,
I am sure many of you may have noticed already, but basically every
package in Bioc-devel that has a vignette (i.e. almost every package)
is currently issuing warnings in R CMD check:
http://www.bioconductor.org/checkResults/2.12/bioc-LATEST/
I ran some tests myself and it appears that in the
For reference, Jellyfish is supposed to be state of the art for fast
k-mer counting
http://www.cbcb.umd.edu/software/jellyfish/
Kasper
On Thu, Feb 7, 2013 at 6:51 PM, Hervé Pagès wrote:
> Hi Dario,
>
>
> On 02/05/2013 05:00 PM, Dario Strbenac wrote:
>>
>> Hello,
>>
>> Would it be possible to i
Hi Dario,
On 02/05/2013 05:00 PM, Dario Strbenac wrote:
Hello,
Would it be possible to include an option that firstly goes through all of the
strings and runs a sliding window along them, to find all the unique k-mers
present in the dataset ?
Finding the unique k-mers in the dataset can eas
Great, thanks!
robert.
On 02/07/2013 05:44 PM, Valerie Obenchain wrote:
Hi Robert,
I will look into this next week. Thanks for providing details and
examples in the request.
Valerie
On 02/06/2013 04:10 PM, Robert Castelo wrote:
dear maintainers of the graph package,
i have a small request f
Hi Robert,
I will look into this next week. Thanks for providing details and
examples in the request.
Valerie
On 02/06/2013 04:10 PM, Robert Castelo wrote:
dear maintainers of the graph package,
i have a small request for the constructor function graphBAM() from the
graph package.
the curr
