Hi, I am sure many of you may have noticed already, but basically every package in Bioc-devel that has a vignette (i.e. almost every package) is currently issuing warnings in R CMD check: http://www.bioconductor.org/checkResults/2.12/bioc-LATEST/
I ran some tests myself and it appears that in the latest version of R-devel some changes have been introduced in R CMD build that causes it not to copy the compiled PDF vignettes to inst\doc. R CMD build returns only a silent warning such as: * creating vignettes ... OK Warning in file.copy(c(vigns$docs, outfiles), doc_dir) : problem copying E:\biocbld\bbs-2.12-bioc\tmpdir\Rtmpq4jjoR\Rbuild93c202b5ca6\plgem\vignettes\plgem.pdf to inst\doc\plgem.pdf: No such file or directory R CMD check then issues the following user-visible warning: * checking package vignettes in 'inst/doc' ... WARNING Package vignette without corresponding PDF: 'plgem.Rnw' Compiling my package from the same source but using the previous version of R CMD build does not cause any problems, i.e. the vignette PDF is correctly copied to inst/doc and R CMD check does not issue any warning. Should we bring this up to R-Devel mailing list? Cheers, Norman _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
