On Thu, Feb 7, 2013 at 8:48 PM, Dan Tenenbaum <dtene...@fhcrc.org> wrote: > Hi Norman, > > > On Thu, Feb 7, 2013 at 6:59 PM, Norman Pavelka <normanpave...@gmail.com> > wrote: >> Hi, >> >> I am sure many of you may have noticed already, but basically every >> package in Bioc-devel that has a vignette (i.e. almost every package) >> is currently issuing warnings in R CMD check: >> http://www.bioconductor.org/checkResults/2.12/bioc-LATEST/ >> >> I ran some tests myself and it appears that in the latest version of >> R-devel some changes have been introduced in R CMD build that causes >> it not to copy the compiled PDF vignettes to inst\doc. R CMD build >> returns only a silent warning such as: >> >> * creating vignettes ... OK >> Warning in file.copy(c(vigns$docs, outfiles), doc_dir) : >> problem copying >> E:\biocbld\bbs-2.12-bioc\tmpdir\Rtmpq4jjoR\Rbuild93c202b5ca6\plgem\vignettes\plgem.pdf >> to inst\doc\plgem.pdf: No such file or directory >> >> R CMD check then issues the following user-visible warning: >> >> * checking package vignettes in 'inst/doc' ... WARNING >> Package vignette without corresponding PDF: >> 'plgem.Rnw' >> >> Compiling my package from the same source but using the previous >> version of R CMD build does not cause any problems, i.e. the vignette >> PDF is correctly copied to inst/doc and R CMD check does not issue any >> warning. >> >> Should we bring this up to R-Devel mailing list? > > > I'm not sure (checking right now) but I think this was fixed in r61843. > The build machines are running r61836. The nightly build is underway > but I will update R-devel tomorrow if doing so indeed fixes the > problem. >
I can confirm that pdfs are properly copied into source tarballs with R-devel r61868. I will update to the latest R-devel tomorrow. Dan > Thanks! > Dan > >> >> Cheers, >> Norman >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
