[med-svn] [Git][med-team/last-align] Pushed new tag debian/1608-1

2025-01-15 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/1608-1 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/debian/1608-1 You're receiving this email because of your account on salsa.debian.org. ___ debia

[med-svn] [Git][med-team/last-align] Pushed new tag upstream/1608

2025-01-15 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag upstream/1608 at Debian Med / last-align -- View it on GitLab: https://salsa.debian.org/med-team/last-align/-/tree/upstream/1608 You're receiving this email because of your account on salsa.debian.org. ___ debia

[med-svn] [Git][med-team/last-align][master] 6 commits: New upstream version 1608

2025-01-15 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / last-align Commits: 7b3a8d61 by Charles Plessy at 2025-01-16T13:50:32+09:00 New upstream version 1608 - - - - - 2a2770c1 by Charles Plessy at 2025-01-16T13:50:32+09:00 New upstream version - - - - - e5f9036d by Charles Plessy at 2025-01

[med-svn] [Git][med-team/last-align][pristine-tar] pristine-tar data for last-align_1608.orig.tar.bz2

2025-01-15 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch pristine-tar at Debian Med / last-align Commits: 115b1bd1 by Charles Plessy at 2025-01-16T13:50:34+09:00 pristine-tar data for last-align_1608.orig.tar.bz2 - - - - - 2 changed files: - + last-align_1608.orig.tar.bz2.delta - + last-align_1608.orig.tar.bz2.id

[med-svn] [Git][med-team/last-align][upstream] New upstream version 1608

2025-01-15 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch upstream at Debian Med / last-align Commits: 7b3a8d61 by Charles Plessy at 2025-01-16T13:50:32+09:00 New upstream version 1608 - - - - - 30 changed files: - bin/fasta-nr - bin/last-dotplot - bin/last-map-probs - bin/last-postmask - bin/last-train - bin/maf

[med-svn] [Git][med-team/last-align][master] Update 2 files

2025-01-15 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / last-align Commits: 49008ce1 by Charles Plessy at 2025-01-16T04:47:02+00:00 Update 2 files - /debian/patches/fix-shebang.patch - /debian/patches/series - - - - - 2 changed files: - − debian/patches/fix-shebang.patch - debian/patches

[med-svn] [Git][med-team/last-align][master] Update watch following Debian Wiki

2025-01-15 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / last-align Commits: 810784a8 by Charles Plessy at 2025-01-16T04:35:15+00:00 Update watch following Debian Wiki https://wiki.debian.org/debian/watch#GitLab - - - - - 1 changed file: - debian/watch Changes

Bug#1092364: [Debian-med-packaging] Bug#1092364: cluster3: needs rebuild for Python 3.13 as default

2025-01-07 Thread Charles Plessy
e day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/@charles_plessy - You do not have my permission to use this email to train an AI -

Bug#1092364: [Debian-med-packaging] Bug#1092364: cluster3: needs rebuild for Python 3.13 as default

2025-01-07 Thread Charles Plessy
e day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/@charles_plessy - You do not have my permission to use this email to train an AI -

Re: Proposal: Optional `Priority: optional` and changed `Section` fall-back

2024-12-15 Thread Charles Plessy
Le Sun, Dec 15, 2024 at 09:27:06AM +0100, Niels Thykier a écrit : > We would like [...] that `dpkg` provides defaults [...] if the fields > are omitted from `debian/control`, you get `Priority: optional` and > `Section: unknown` as default in all artifacts (`.dsc`, `.changes`, > and in the `.deb`).

Re: Bits from DPL / Feedback on attracting newcomers

2024-12-12 Thread Charles Plessy
> On Wed, Dec 11, 2024 at 09:29:08PM +0900, Charles Plessy wrote: > > Last time I had to write a removal request I asked ChatGPT and it worked > > well! Le Wed, Dec 11, 2024 at 02:29:08PM +, Holger Levsen a écrit : > > is this debian-devel@ or -curiosa@? (&scnr) Hi

Re: Bits from DPL / Feedback on attracting newcomers

2024-12-11 Thread Charles Plessy
hrough hoops when > possible. With enough practice, anyone could jump through a hoop as well. Last time I had to write a removal request I asked ChatGPT and it worked well! -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.d

Re: Bits from DPL / Feedback on attracting newcomers

2024-12-10 Thread Charles Plessy
t is less guarateed that an email is really being delivered after being sent. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://

Re: Musings about Usernames in adduser and Debian

2024-12-10 Thread Charles Plessy
, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/@charles_plessy - You do not have my permission to use this email to train an AI -

Bug#1089461: umegaya: Supporting rootless builds by default

2024-12-07 Thread Charles Plessy
Control: reassign 1089461 ftp.debian.org Control: retitle 1089461 RM: umegaya -- RoM; package no longer maintained (Thanks ChagtGPT for writing the bug title for me) Dear FTP team, please remove umegaya from our archive. This package will stay dear in my heart, as this work lead to the adoption

Bug#1072630: r-cran-dplyr needs some love

2024-12-07 Thread Charles Plessy
that disables the test suite. Have a nice week-end, Charles Le Sun, Nov 24, 2024 at 08:44:04AM +0900, Charles Plessy a écrit : > Hi Dirk and everybody, > > yes it is in the radar. I will disable the tests before the removal if I > or others can not fix the failure: > &g

Bug#1072630: r-cran-dplyr needs some love

2024-12-07 Thread Charles Plessy
that disables the test suite. Have a nice week-end, Charles Le Sun, Nov 24, 2024 at 08:44:04AM +0900, Charles Plessy a écrit : > Hi Dirk and everybody, > > yes it is in the radar. I will disable the tests before the removal if I > or others can not fix the failure: > &g

Re: The advantages of splitting /bin and /usr/bin, and /sbin and /usr/sbin outweigh the disadvantages

2024-12-02 Thread Charles Plessy
-- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work, https://fediscience.org/@charles_plessy Tooting from home, https://framapiaf.org/@charles_plessy

Re: DEP-0, DEP0 or DEP 0?

2024-11-30 Thread Charles Plessy
Le Sat, Nov 30, 2024 at 09:49:34AM +0100, Iustin Pop a écrit : > "DEP 8" is not easily searchable. Interestingly, on DuckDuckGo, https://dep-team.pages.debian.net/deps/dep8/ ranks 3rd when I search with DEP-8, but it ranks 2nd when I search with DEP 8! Have a nice week-end, Charles

Re: SideRETRO Package to DebianScience

2024-11-18 Thread Charles Plessy
t; Rio Grande do Sul, Brazil > daniela.momb...@ufrgs.br > > https://linktr.ee/danielamombach -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.

Re: SideRETRO Package to DebianScience

2024-11-18 Thread Charles Plessy
[Resent to Debian Med as I made a typo in its address...] Le Tue, Nov 19, 2024 at 01:46:01PM +0900, Charles Plessy a écrit : > Le Mon, Nov 18, 2024 at 02:17:07PM -0300, Daniela Moreira Mombach a écrit : > > > > I've created an ITP to send a tool developed in our lab, side

Re: SideRETRO Package to DebianScience

2024-11-18 Thread Charles Plessy
[Resent to Debian Med as I made a typo in its address...] Le Tue, Nov 19, 2024 at 01:46:01PM +0900, Charles Plessy a écrit : > Le Mon, Nov 18, 2024 at 02:17:07PM -0300, Daniela Moreira Mombach a écrit : > > > > I've created an ITP to send a tool developed in our lab, side

Diffs of debci runs?

2024-11-15 Thread Charles Plessy
stamps, - visualise the differences with icdiff. This was already a big progress compared with eyeballing, but I was wondering if I missed a more automated tool of if somebody knew a more powerful approach. Have a nice week-end ! Charles -- Charles Plessy Nagahama

Re: Things learned from the expeirment (Re: Debian Monthly [debian-devel]: AI News Report 2024/10

2024-11-15 Thread Charles Plessy
Hi Mo, thanks again for your posts, I was just thinking that the debian-mentors list could be a good target for summarisation too: it is high traffic, email subject lines are focused on what to upload, but discussions are focused on problem-solving, thus some intersting tips & trick will be easy

Re: Python 3.13 addition as a supported Python version started

2024-11-13 Thread Charles Plessy
c. leverage AI to send patches upstream by themselves and free us from that burden. Bonne soirée, -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work, https://fediscien

Re: Debian Monthly [debian-devel]: AI News Report 2024/10

2024-11-09 Thread Charles Plessy
Thanks a lot Mo for this exciting experiment! And having two ex-DPLs pressing the big red stop button is not necessarly a bad sign in an ageing project. Often you will see ideas rejected in a very dismissive if not insulting way (for example source-only uploads or HTTPS URLs in /etc/apt/sources.l

Re: RFC: "Recommended bloat", and how to possibly fix it

2024-11-06 Thread Charles Plessy
python packages when trying to use some filters. The Suggests field in Debian is not very useful at the moment, but there is a straightforward way to repurpose it. And apt-get already has an --install-suggests option. Have a nice day, -- Charles Plessy Nagahama, Yomitan

Help needed on providing the en_US locale in autopkgtests

2024-11-05 Thread Charles Plessy
vide the needed locale to debci, please let me know. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian R packaging team https://wiki.debian.org/Teams/r-pkg-team Tooting from home https://framapiaf.org/@charles_pless

Bug#1072630: Help needed on providing the en_US locale in autopkgtests

2024-11-05 Thread Charles Plessy
vide the needed locale to debci, please let me know. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian R packaging team https://wiki.debian.org/Teams/r-pkg-team Tooting from home https://framapiaf.org/@charles_pless

Bug#1072630: Help needed on providing the en_US locale in autopkgtests

2024-11-05 Thread Charles Plessy
vide the needed locale to debci, please let me know. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian R packaging team https://wiki.debian.org/Teams/r-pkg-team Tooting from home https://framapiaf.org/@charles_pless

Bug#1086215: RM: r-cran-tmb [armel armhf i386] -- RoM

2024-10-28 Thread Charles Plessy
Package: ftp.debian.org Please remove r-cran-tmb and its reverse dependencies from 32-bit architectures as we stopped building for them. Thanks, -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med

Re: Concerns regarding the "Open Source AI Definition" 1.0-RC2

2024-10-28 Thread Charles Plessy
divide they are about to support if the current OSI draft is accepted? https://opensource.org/ai/endorsements Cheers, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from

Re: Most optimal way to import NMU into existing git-builpackage repository?

2024-10-25 Thread Charles Plessy
> > "the archive is the truth" > "git is the truth" Maybe you can rephrase it to "the archive is the present and git is the future". For instance if a NMU is obsoleted by a new upstream release, you can ignore the NMU and continue from your latest upload. Have a nice day, Charles

Bug#1081117: (r-cran-)survey not migrating to testing autoremovals

2024-10-18 Thread Charles Plessy
4 at 04:14:48PM +0900, Charles Plessy a écrit : > > quick message to say that r-cran-survey now passes all the CI tests > after I converted it to an architecture-dependent package.

Bug#1081117: (r-cran-)survey not migrating to testing autoremovals

2024-10-18 Thread Charles Plessy
4 at 04:14:48PM +0900, Charles Plessy a écrit : > > quick message to say that r-cran-survey now passes all the CI tests > after I converted it to an architecture-dependent package.

Re: Will i386 released for Trixie and if no can we stop working on it now?

2024-10-14 Thread Charles Plessy
than changing 500 packages and filling 500 removal bugs by hand? Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapia

Re: Will i386 released for Trixie and if no can we stop working on it now?

2024-10-13 Thread Charles Plessy
email to a bot somewhere with a list of packages, and voilà, they are removed seamlessly and we can focus on other tasks? Have a nice day Chares -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med T

Will i386 released for Trixie and if no can we stop working on it now?

2024-10-13 Thread Charles Plessy
gle operation instead of filling plenty of bugs and modifying plenty of debian/control files? Life is too short to spend our time on doing that. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.deb

Bug#1010604: Support commonly used providers like github.com and gitlab.com within watch file

2024-10-06 Thread Charles Plessy
# Also fix options to add searchmode=plain } ``` Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org

Re: Dropping big-endian (s390x) support for some r-bioc-* packages

2024-10-02 Thread Charles Plessy
because it puts the whole burden on mostly just us. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/@charles_ples

Re: Service d'envoi de message secret (mot de passe)

2024-10-01 Thread Charles Plessy
Le Tue, Oct 01, 2024 at 10:10:26PM +0200, Sébastien Dinot a écrit : > > Quand il s'agit d'une information pas trop sensible à destination d'un > collègue avec lequel je suis en train de converser en privé sur un chat, > j'envoie l'URL sur le canal sans mot de passe, mais en ayant activé l'option >

[med-svn] [Git][med-team/tree-puzzle] Pushed new tag debian/5.3_rc16+dfsg-11

2024-09-26 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/5.3_rc16+dfsg-11 at Debian Med / tree-puzzle -- View it on GitLab: https://salsa.debian.org/med-team/tree-puzzle/-/tree/debian/5.3_rc16+dfsg-11 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/tree-puzzle][master] Don't install output generated by tests because of nondeterminism.

2024-09-26 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / tree-puzzle Commits: e52253af by Charles Plessy at 2024-09-27T15:46:39+09:00 Don't install output generated by tests because of nondeterminism. - - - - - 2 changed files: - debian/changelog - debian/rules Ch

Re: Supporting alternative zlib implementations

2024-09-24 Thread Charles Plessy
Le Tue, Sep 24, 2024 at 03:58:10PM +0200, Mark Brown a écrit : > >zlib-ng: https://github.com/zlib-ng/zlib-ng Hi Mark, just out of curiosity, would the carbon footprint of Debian be lower or higher after replacing zlib with zlib-ng? Have a nice day, Charles -- Charles

Re: sensible languages for younger contributors (was Re: lintian.debian.org off ?)

2024-09-22 Thread Charles Plessy
lus everything available under debian.org… Cheers, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work, https://fediscience.org/@charles_plessy Tooting from h

Bug#1082295: [R-pkg-team] Bug#1082295: r-bioc-dropletutils: autopkgtest failure on riscv64

2024-09-19 Thread Charles Plessy
e (and maybe the whole Bioconductor) for riscv64. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/@charles_plessy -

Bug#1081315: [Debian-med-packaging] Bug#1081315: glam2: homepage defunct

2024-09-10 Thread Charles Plessy
distribute: https://web.archive.org/web/20091012214158/http://bioinformatics.org.au/glam2/ Cheers, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home

Re: DEP5 and spdx shortname of license

2024-09-08 Thread Charles Plessy
and many other projects. About saying MIT instead of Expat, I fully [1] agree [2]. 1: https://lists.debian.org/debian-project/2010/08/msg00109.html 2: https://lists.debian.org/debian-project/2011/12/msg00034.html Have a nice day, Charles -- Charles Plessy Nagahama,

Re: Bits from DPL

2024-09-04 Thread Charles Plessy
chitecture-specific removals can not be done under this pattern, but maybe it could be automated that anything depending on architecture-is-64-bit gets removed from i386, armel and armhf for instance? Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan

Bug#1080381: RM: r-cran-tmp [i386 armel armhf], r-cran-glmmtmb [i386 armel armhf] -- RoM; 32-bit arches unsupported

2024-09-03 Thread Charles Plessy
Package: ftp.debian.org Please remove 32-bit arch packages for r-cran-tmp and r-cran-glmmtm as I have made them build-depend on architecture-is-64-bit. Thanks! Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http

Bug#1079948: [R-pkg-team] Bug#1079948: r-cran-conting: Package ‘conting’ was removed from the CRAN repository.

2024-08-28 Thread Charles Plessy
> Locale: LANG=nl_NL.UTF-8, LC_CTYPE=nl_NL.UTF-8 (charmap=UTF-8), LANGUAGE not > set > Shell: /bin/sh linked to /usr/bin/dash > Init: systemd (via /run/systemd/system) > LSM: AppArmor: enabled > > ___ > R-pkg-team mailing list &g

Bug#1079946: [R-pkg-team] Bug#1079946: r-cran-cgdsr: Package ‘cgdsr’ was removed from the CRAN repository.

2024-08-28 Thread Charles Plessy
ocale: LANG=nl_NL.UTF-8, LC_CTYPE=nl_NL.UTF-8 (charmap=UTF-8), LANGUAGE not > set > Shell: /bin/sh linked to /usr/bin/dash > Init: systemd (via /run/systemd/system) > LSM: AppArmor: enabled > > ___ > R-pkg-team mailing list > r-pk

Bug#1079945: [R-pkg-team] Bug#1079945: r-cran-assertive.sets: Package ‘assertive.sets’ was removed from the CRAN repository.

2024-08-28 Thread Charles Plessy
am mailing list > r-pkg-t...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/r-pkg-team -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tootin

Re: Removing more packages from unstable

2024-08-20 Thread Charles Plessy
Le Tue, Aug 20, 2024 at 07:28:52AM +0200, Helmut Grohne a écrit : > > please allow me to open a can of worms. Package removal from unstable. Hi all, I think that package removal from Unstable, total or partial (for instance, 32-bit architectures) should be an automated self-sevice system for lea

Re: Request for feedback on draft: DEP-18: Enable true open collaboration on all Debian packages

2024-08-03 Thread Charles Plessy
e, one problem I have with NMUs in team-maintained package is that they often bypass Salsa… Would it make sense to add to the DEP a request that NMUs are started from and pushed to the default branch? Have a nice week-end, Charles -- Charles Plessy Nagahama, Yomitan, Oki

Re: Request for feedback on draft: DEP-18: Enable true open collaboration on all Debian packages

2024-08-01 Thread Charles Plessy
y. Would there be a way to get Salsa upload and tag the package if the CI tests pass and the changelog signals a release? Or does somebody has a script which can screen a Salsa group for ready uploads, and run clone && buildpackage && dput automatically ? Cheers, Ch

Bug#1077454: [Debian-med-packaging] Bug#1077454: bioperl-run: t/SABlastPlus.t failure

2024-07-31 Thread Charles Plessy
ink that it is probably fine to release without it and to consider removing package go if we do not get complains. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med

Bug#1077454: [Debian-med-packaging] Bug#1077454: bioperl-run: t/SABlastPlus.t failure

2024-07-31 Thread Charles Plessy
ink that it is probably fine to release without it and to consider removing package go if we do not get complains. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med

Bug#1077463: Forwarded upstream Bug#1077463: r-cran-backports: autopkgtest regression: Testing test_dotlibPaths.R

2024-07-29 Thread Charles Plessy
Control: forwarded 1077463 https://github.com/r-lib/backports/issues/83 Hi all, I forwarded the issue upstream. I hope they fix it themselves and we can close this bug with a routine upload. Have a nice day, Charles Le Mon, Jul 29, 2024 at 07:56:49AM +0200, Paul Gevers a écrit : > Source: r-c

Bug#1077463: Forwarded upstream Bug#1077463: r-cran-backports: autopkgtest regression: Testing test_dotlibPaths.R

2024-07-29 Thread Charles Plessy
Control: forwarded 1077463 https://github.com/r-lib/backports/issues/83 Hi all, I forwarded the issue upstream. I hope they fix it themselves and we can close this bug with a routine upload. Have a nice day, Charles Le Mon, Jul 29, 2024 at 07:56:49AM +0200, Paul Gevers a écrit : > Source: r-c

[med-svn] [Git][med-team/gffread][master] Remove Breaks/Replace on cufflinks (<< 2.2.1+dfsg.1-4), as oldstable already has 2.2.1+dfsg.1-8+b1

2024-07-22 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / gffread Commits: bc174363 by Charles Plessy at 2024-07-23T05:29:47+00:00 Remove Breaks/Replace on cufflinks (<< 2.2.1+dfsg.1-4), as oldstable already has 2.2.1+dfsg.1-8+b1 - - - - - 1 changed file: - debian/control C

Bug#1076615: [R-pkg-team] Bug#1076615: r-cran-metamix: autopkgtest regression with rmpi 0.7-2-2 (armel, armhf, i386)

2024-07-21 Thread Charles Plessy
hp?package=rmpi > [2] https://buildd.debian.org/status/package.php?p=rmpi > > -- > dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org > > ___ > R-pkg-team mailing list > r-pkg-t...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bi

Bug#1076615: [R-pkg-team] Bug#1076615: r-cran-metamix: autopkgtest regression with rmpi 0.7-2-2 (armel, armhf, i386)

2024-07-21 Thread Charles Plessy
hp?package=rmpi > [2] https://buildd.debian.org/status/package.php?p=rmpi > > -- > dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org > > ___ > R-pkg-team mailing list > r-pkg-t...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bi

Re: sra-sdk: drop B-D on markdown

2024-07-07 Thread Charles Plessy
ole line can just be reomved... I do not see anything in the package that uses the markdown command to build documentation. Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian

Bug#1074529: [R-pkg-team] Bug#1074529: r-cran-dimred: autopkgtest regression with r-base 4.4.1 (i386)

2024-07-01 Thread Charles Plessy
hecks/check_results_dimRed.html Hello everybody, among the tested release architectures, only i386 is failing. I can update r-cran-dimred so that it excludes i386. But would that mean I have to do that for its reverse-dependencies too ? Have a nice day, Charles -- Charles Plessy

Bug#1074529: [R-pkg-team] Bug#1074529: r-cran-dimred: autopkgtest regression with r-base 4.4.1 (i386)

2024-07-01 Thread Charles Plessy
hecks/check_results_dimRed.html Hello everybody, among the tested release architectures, only i386 is failing. I can update r-cran-dimred so that it excludes i386. But would that mean I have to do that for its reverse-dependencies too ? Have a nice day, Charles -- Charles Plessy

Re: [Bioc-devel] Package with restrictive licenses, not suitable for Bioconductor

2024-06-30 Thread Charles Plessy
alue_meme.c#L14 It may also cause incompatibility problems with the GPL license of the whole R package when distributed as a binary package or a container image. Best, Charles, Debian developer and OIST.jp researcher -- Charles Plessy http://charles.plessy.org Nagah

[med-svn] [Git][med-team/cluster3][master] 3 commits: routine-update: Standards-Version: 4.7.0

2024-06-25 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / cluster3 Commits: 3bf08887 by Charles Plessy at 2024-06-26T08:41:16+09:00 routine-update: Standards-Version: 4.7.0 - - - - - 05fc0c12 by Charles Plessy at 2024-06-26T08:41:24+09:00 routine-update: Build-Depends: s/dh-python/dh-sequence

[med-svn] [Git][med-team/cluster3] Pushed new tag debian/1.59+ds-6

2024-06-25 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/1.59+ds-6 at Debian Med / cluster3 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/cluster3/-/tree/debian/1.59+ds-6 You're receiving this email because of your accou

Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies

2024-06-24 Thread Charles Plessy
By the way, Giulio's Gmail rejects my messages, so maybe somebody can bounce the news to him ? Le Tue, Jun 25, 2024 at 08:40:46AM +0900, Charles Plessy a écrit : > Hi all, > > I just uploaded bcftools with the Python dependencies moved to Recomends > because: > > - they

Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies

2024-06-24 Thread Charles Plessy
By the way, Giulio's Gmail rejects my messages, so maybe somebody can bounce the news to him ? Le Tue, Jun 25, 2024 at 08:40:46AM +0900, Charles Plessy a écrit : > Hi all, > > I just uploaded bcftools with the Python dependencies moved to Recomends > because: > > - they

Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies

2024-06-24 Thread Charles Plessy
. Thanks Giulio for the feedback! Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/@charles_plessy - You do not have my permission

Re: package bcftools dependencies for gff2gff.py and guess-ploidy.py cause bcftools to have 10x as many dependencies

2024-06-24 Thread Charles Plessy
. Thanks Giulio for the feedback! Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/@charles_plessy - You do not have my permission

[med-svn] [Git][med-team/bcftools] Pushed new tag debian/1.20-2

2024-06-24 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/1.20-2 at Debian Med / bcftools -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/bcftools/-/tree/debian/1.20-2 You're receiving this email because of your accou

[med-svn] [Git][med-team/bcftools][master] 2 commits: Only recommend python-matplotlib and python3-gffutils

2024-06-24 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / bcftools Commits: 88146e98 by Charles Plessy at 2024-06-25T08:30:49+09:00 Only recommend python-matplotlib and python3-gffutils This allows advanced users to make a minimal installation of bcftools without these python libraries. Regular

Bug#1073106: marked as pending in swarm-cluster

2024-06-13 Thread Charles Plessy
Control: tag -1 pending Hello, Bug #1073106 in swarm-cluster reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/swarm-cluster/-/commit/790cc43073aa1d80e2b

[med-svn] [Git][med-team/swarm-cluster][master] Build-depend on discount instead of markdown

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / swarm-cluster Commits: 790cc430 by Charles Plessy at 2024-06-14T02:46:03+00:00 Build-depend on discount instead of markdown Closes: #1073106 - - - - - 1 changed file: - debian/control Changes

Bug#1073105: marked as pending in ssake

2024-06-13 Thread Charles Plessy
Control: tag -1 pending Hello, Bug #1073105 in ssake reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/ssake/-/commit/e182ba7de0f9b15d434fec946810055d09a

[med-svn] [Git][med-team/ssake][master] Build-depend on discount instead of Markown

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / ssake Commits: e182ba7d by Charles Plessy at 2024-06-14T00:59:30+00:00 Build-depend on discount instead of Markown Closes: #1073105 - - - - - 1 changed file: - debian/control Changes: = debian

[med-svn] [Git][med-team/srst2] Pushed new tag debian/0.2.0-12

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/0.2.0-12 at Debian Med / srst2 -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/srst2/-/tree/debian/0.2.0-12 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/srst2][master] 4 commits: routine-update: Packaging update

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / srst2 Commits: 1a9b2af8 by Charles Plessy at 2024-06-14T09:24:47+09:00 routine-update: Packaging update - - - - - 1238a783 by Charles Plessy at 2024-06-14T09:24:47+09:00 routine-update: Standards-Version: 4.7.0 - - - - - 178d924a by

Bug#1073104: marked as pending in srst2

2024-06-13 Thread Charles Plessy
Control: tag -1 pending Hello, Bug #1073104 in srst2 reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/srst2/-/commit/5f8b6e6042855ddba33a608e8541be06330

[med-svn] [Git][med-team/srst2][master] Build-depend on discount instead of markdown

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / srst2 Commits: 5f8b6e60 by Charles Plessy at 2024-06-14T00:24:20+00:00 Build-depend on discount instead of markdown Closes: #1073104 - - - - - 1 changed file: - debian/control Changes: = debian

[med-svn] [Git][med-team/scythe] Pushed new tag debian/0.994+git20141017.20d3cff-5

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/0.994+git20141017.20d3cff-5 at Debian Med / scythe -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/scythe/-/tree/debian/0.994+git20141017.20d3cff-5 You're receiving this

[med-svn] [Git][med-team/scythe][master] 3 commits: Update changelog

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / scythe Commits: 72660e72 by Charles Plessy at 2024-06-14T08:53:19+09:00 Update changelog - - - - - f03746f2 by Charles Plessy at 2024-06-14T08:53:51+09:00 Set upstream metadata fields: Bug-Submit. Changes-By: lintian-brush Fixes: lintian

Bug#1073103: marked as pending in scythe

2024-06-13 Thread Charles Plessy
Control: tag -1 pending Hello, Bug #1073103 in scythe reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/scythe/-/commit/953eea5245cbf129820dc601f3c0669fe

Bug#1073098: marked as pending in libvcflib

2024-06-13 Thread Charles Plessy
Control: tag -1 pending Hello, Bug #1073098 in libvcflib reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/libvcflib/-/commit/becbc3630213bcc3e3137abdd79

[med-svn] [Git][med-team/scythe][master] Build-depend on discount instead of makdown

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / scythe Commits: 953eea52 by Charles Plessy at 2024-06-13T23:51:27+00:00 Build-depend on discount instead of makdown Closes: #1073103 - - - - - 1 changed file: - debian/control Changes: = debian

[med-svn] [Git][med-team/libvcflib][master] Build-depend on discount instead of markdown

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / libvcflib Commits: becbc363 by Charles Plessy at 2024-06-13T23:50:06+00:00 Build-depend on discount instead of markdown Closes: #1073098 - - - - - 1 changed file: - debian/control Changes

[med-svn] [Git][med-team/hilive] Pushed new tag debian/2.0a-4

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/2.0a-4 at Debian Med / hilive -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/hilive/-/tree/debian/2.0a-4 You're receiving this email because of your account on salsa.debia

[med-svn] [Git][med-team/hilive][master] 8 commits: Fix debian/watch

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / hilive Commits: a30d0516 by Charles Plessy at 2024-06-14T08:29:57+09:00 Fix debian/watch - - - - - 7409d9d0 by Charles Plessy at 2024-06-14T08:30:22+09:00 Commit changelog - - - - - 9e7a67e3 by Charles Plessy at 2024-06-14T08:30:39+09:00

Bug#1073095: marked as pending in hilive

2024-06-13 Thread Charles Plessy
Control: tag -1 pending Hello, Bug #1073095 in hilive reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/hilive/-/commit/904fb9ec71de3d067f31607f6d7998a4f

[med-svn] [Git][med-team/hilive][master] Build-depend on discount instead of markdown

2024-06-13 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / hilive Commits: 904fb9ec by Charles Plessy at 2024-06-13T23:15:21+00:00 Build-depend on discount instead of markdown Closes: #1073095 - - - - - 1 changed file: - debian/control Changes: = debian

Bug#1073090: marked as pending in alter-sequence-alignment

2024-06-12 Thread Charles Plessy
Control: tag -1 pending Hello, Bug #1073090 in alter-sequence-alignment reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/alter-sequence-alignment/-/comm

[med-svn] [Git][med-team/alter-sequence-alignment][master] 5 commits: Build-depend on discount instead of markdown.

2024-06-12 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / alter-sequence-alignment Commits: 3516749a by Charles Plessy at 2024-06-13T08:48:35+09:00 Build-depend on discount instead of markdown. Closes: #1073090 - - - - - 125042d5 by Charles Plessy at 2024-06-13T08:49:31+09:00 routine-update

[med-svn] [Git][med-team/alter-sequence-alignment] Pushed new tag debian/1.3.4-9

2024-06-12 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/1.3.4-9 at Debian Med / alter-sequence-alignment -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/alter-sequence-alignment/-/tree/debian/1.3.4-9 You're receiving this email be

Bug#1073089: marked as pending in adapterremoval

2024-06-12 Thread Charles Plessy
Control: tag -1 pending Hello, Bug #1073089 in adapterremoval reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/med-team/adapterremoval/-/commit/7fa0487843be8a1e3

[med-svn] [Git][med-team/adapterremoval][master] 4 commits: Build-depend on discount instead of markdown

2024-06-12 Thread Charles Plessy (@plessy)
Charles Plessy pushed to branch master at Debian Med / adapterremoval Commits: 7fa04878 by Charles Plessy at 2024-06-13T08:28:40+09:00 Build-depend on discount instead of markdown Closes: #1073089 - - - - - 1dbe1973 by Charles Plessy at 2024-06-13T08:41:28+09:00 Update changelog

[med-svn] [Git][med-team/adapterremoval] Pushed new tag debian/2.3.3-3

2024-06-12 Thread Charles Plessy (@plessy)
Charles Plessy pushed new tag debian/2.3.3-3 at Debian Med / adapterremoval -- This project does not include diff previews in email notifications. View it on GitLab: https://salsa.debian.org/med-team/adapterremoval/-/tree/debian/2.3.3-3 You're receiving this email because of your accou

Bug#1072979: [Debian-med-packaging] Bug#1072979: beast-mcmc - build-dependencies unsatisfiable on i386.

2024-06-11 Thread Charles Plessy
h-specific removals were handled automatically. That would save everybody a lot of work! Cheers, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work,

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