On Sat, Jan 11, 2025 at 8:08 AM Pavel Galashin <pgalas...@gmail.com> wrote: > > I ran the same commands from scratch in new folders: > > $ git clone -c core.symlinks=true --filter blob:none \ --origin upstream > --branch develop --tags \ https://github.com/sagemath/sage.git $ cd sage $ > make configure $ source ./.homebrew-build-env $ ./configure > --with-python=`which pythonX.X` $ make -s V=0 -j1 > > The results: > - python3.9: works (as above) > - python3.10: also works > - python3.11: Error installing package scipy-1.12.0 (end of log file > attached) > - python3.12: hangs on installing sagemath_doc_html-none (as above); > scipy-1.12.0 installed successfully.
Thanks! Regarding python3.11 - it could be just a random one-off error, but in any even it does not look like a Sage problem. Can you install scipy with python 3.11 without sage? (Just make a venv, activate it, and follow the standard scipy instructions to build from source. It would be good if you can say whether 1.12.0 and the latest 1.15.1 are installable this way) For the latest scipy it's just one command (assuming you're in an active venv) pip install scipy --no-binary scipy > > > On Thursday, January 9, 2025 at 10:27:49 AM UTC-8 dim...@gmail.com wrote: >> >> It would be great if you tried newer Homebrew Pythons, .i.e. 3.10 and 3.11, >> too, and reported here the results. >> >> On Thursday, January 9, 2025 at 10:52:07 AM UTC-6 pgal...@gmail.com wrote: >>> >>> It was installed via homebrew, same as python3.12: >>> $ which python3.9 /opt/homebrew/bin/python3.9 >>> >>> On Thursday, January 9, 2025 at 7:59:39 AM UTC-8 dim...@gmail.com wrote: >>>> >>>> Thanks. So, what's the output of >>>> >>>> which python3.9 >>>> in your case? And where does it come from? I suppose the issue lies in >>>> multiptocessing/multithreading support in Python, which eveloved a lot >>>> since 3.9. >>>> >>>> More Pythons to try might be from https://www.python.org/downloads/ (it >>>> would be good to know which of these 3.9-3.12 work) >>>> >>>> On Thursday, January 9, 2025 at 2:51:05 AM UTC-6 pgal...@gmail.com wrote: >>>>> >>>>> Huh, the problem got completely solved just by switching to Python 9! >>>>> Thanks a lot for the help! >>>>> >>>>> $ make distclean $ ./configure --with-python=`which python3.9` $ make -s >>>>> V=0 -j1 >>>>> ... >>>>> >>>>> [tzlocal-5.0.1] installing. Log file: >>>>> /Users/user/sage/sage/logs/pkgs/tzlocal-5.0.1.log [tzlocal-5.0.1] >>>>> successfully installed. Sage build/upgrade complete! real 101m19.420s >>>>> user 96m41.546s sys 14m53.704s PG-Mac-2:sage user$ ./sage >>>>> ┌────────────────────────────────────────────────────────────────────┐ │ >>>>> SageMath version 10.6.beta3, Release Date: 2025-01-04 │ │ Using Python >>>>> 3.9.21. Type "help()" for help. │ >>>>> └────────────────────────────────────────────────────────────────────┘ >>>>> ┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓ ┃ >>>>> Warning: this is a prerelease version, and it may be unstable. ┃ >>>>> ┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛ >>>>> sage: sin(pi/3) 1/2*sqrt(3) >>>>> >>>>> >>>>> On Tuesday, January 7, 2025 at 8:52:57 AM UTC-8 Pavel Galashin wrote: >>>>>> >>>>>> That doesn't seem to help: >>>>>> >>>>>> [sagemath_doc_html-none] Setting up build directory >>>>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none >>>>>> [sagemath_doc_html-none] Host system: Darwin PG-Mac-2.local 24.2.0 >>>>>> Darwin Kernel Version 24.2.0: Fri Dec 6 19:03:40 PST 2024; >>>>>> root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 arm64 [sagemath_doc_html-none] >>>>>> C compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), Target: >>>>>> arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: >>>>>> /Library/Developer/CommandLineTools/usr/bin [sagemath_doc_html-none] No >>>>>> stamp file for package 'sagemath_doc_html' in >>>>>> /Users/user/sage/sage/local/var/lib/sage/installed >>>>>> [sagemath_doc_html-none] No spkg-legacy-uninstall script; nothing to do >>>>>> [sagemath_doc_html-none] [spkg-install] mkdir -p en/reference/repl >>>>>> [sagemath_doc_html-none] [spkg-install] sage -advanced > >>>>>> en/reference/repl/options.txt [sagemath_doc_html-none] [spkg-install] >>>>>> make doc-inventory--reference-references [sagemath_doc_html-none] >>>>>> [spkg-install] sage --docbuild --no-pdf-links reference/references >>>>>> inventory >>>>>> >>>>>> >>>>>> sagemath_doc_html-none.log: >>>>>> >>>>>> Setting up build directory >>>>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none >>>>>> Host system: Darwin PG-Mac-2.local 24.2.0 Darwin Kernel Version 24.2.0: >>>>>> Fri Dec 6 19:03:40 PST 2024; root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 >>>>>> arm64 C compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), >>>>>> Target: arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: >>>>>> /Library/Developer/CommandLineTools/usr/bin No stamp file for package >>>>>> 'sagemath_doc_html' in >>>>>> /Users/user/sage/sage/local/var/lib/sage/installed No >>>>>> spkg-legacy-uninstall script; nothing to do [spkg-install] mkdir -p >>>>>> en/reference/repl [spkg-install] sage -advanced > >>>>>> en/reference/repl/options.txt [spkg-install] make >>>>>> doc-inventory--reference-references [spkg-install] sage --docbuild >>>>>> --no-pdf-links reference/references inventory Setting up build directory >>>>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none >>>>>> Host system: Darwin PG-Mac-2.local 24.2.0 Darwin Kernel Version 24.2.0: >>>>>> Fri Dec 6 19:03:40 PST 2024; root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 >>>>>> arm64 C compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), >>>>>> Target: arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: >>>>>> /Library/Developer/CommandLineTools/usr/bin No stamp file for package >>>>>> 'sagemath_doc_html' in >>>>>> /Users/user/sage/sage/local/var/lib/sage/installed No >>>>>> spkg-legacy-uninstall script; nothing to do [spkg-install] mkdir -p >>>>>> en/reference/repl [spkg-install] sage -advanced > >>>>>> en/reference/repl/options.txt [spkg-install] make >>>>>> doc-inventory--reference-references [spkg-install] sage --docbuild >>>>>> --no-pdf-links reference/references inventory >>>>>> On Tuesday, January 7, 2025 at 8:13:14 AM UTC-8 dim...@gmail.com wrote: >>>>>>> >>>>>>> Our docbuilder isn't great, it uses some custom outdated tricks for >>>>>>> parallel building. Switching to a more standard sphinx setup is >>>>>>> overdue... >>>>>>> >>>>>>> Try cleaning docs by >>>>>>> >>>>>>> make doc-clean >>>>>>> >>>>>>> and then run >>>>>>> >>>>>>> make -j1 >>>>>>> >>>>>>> On Tuesday, January 7, 2025 at 2:56:47 AM UTC-6 pgal...@gmail.com wrote: >>>>>>>> >>>>>>>> Thank you for the advice! I used python3.12 and the warning about >>>>>>>> urllib3 disappeared, but make still hangs (for > 12 hours) on the same >>>>>>>> package ``sagemath_doc_html-none``. >>>>>>>> >>>>>>>> [sagemath_doc_html-none] Setting up build directory >>>>>>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none >>>>>>>> [sagemath_doc_html-none] Host system: Darwin PG-Mac-2.local 24.2.0 >>>>>>>> Darwin Kernel Version 24.2.0: Fri Dec 6 19:03:40 PST 2024; >>>>>>>> root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 arm64 >>>>>>>> [sagemath_doc_html-none] C compiler: gcc, Apple clang version 16.0.0 >>>>>>>> (clang-1600.0.26.6), Target: arm64-apple-darwin24.2.0, Thread model: >>>>>>>> posix, InstalledDir: /Library/Developer/CommandLineTools/usr/bin >>>>>>>> [sagemath_doc_html-none] No stamp file for package 'sagemath_doc_html' >>>>>>>> in /Users/user/sage/sage/local/var/lib/sage/installed >>>>>>>> [sagemath_doc_html-none] No spkg-legacy-uninstall script; nothing to >>>>>>>> do [sagemath_doc_html-none] [spkg-install] mkdir -p en/reference/repl >>>>>>>> [sagemath_doc_html-none] [spkg-install] sage -advanced > >>>>>>>> en/reference/repl/options.txt [sagemath_doc_html-none] [spkg-install] >>>>>>>> make doc-inventory--reference-references [sagemath_doc_html-none] >>>>>>>> [spkg-install] sage --docbuild --no-pdf-links reference/references >>>>>>>> inventory ^Z [6]+ Stopped make >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> On Friday, January 3, 2025 at 10:01:34 AM UTC-8 John H Palmieri wrote: >>>>>>>>> >>>>>>>>> To expand on Dima's answer: Homebrew's Python 3.13 is too new to >>>>>>>>> build Sage, so Sage will reject it. The built-in Python 3.9 is, as >>>>>>>>> Dima says, no good for use with Sage. So install Homebrew's python >>>>>>>>> 3.12, do "make distclean", and then use >>>>>>>>> >>>>>>>>> ./configure --with-python=" fill in path to python3.12 " >>>>>>>>> >>>>>>>>> or you can do precisely this: >>>>>>>>> >>>>>>>>> ./configure --with-python=`which python3.12` >>>>>>>>> >>>>>>>>> This should use Homebrew's Python 3.12 (assuming you've installed it) >>>>>>>>> even if you've also installed newer versions with Homebrew. You can >>>>>>>>> tell which version of Python is being used by the symlink "venv" in >>>>>>>>> the top-level Sage directory: >>>>>>>>> >>>>>>>>> % ls -l venv >>>>>>>>> lrwxr-xr-x 1 palmieri staff 34 Dec 30 15:41 venv -> >>>>>>>>> local/var/lib/sage/venv-python3.12 >>>>>>>>> >>>>>>>>> and also by the name of the directory starting "venv" in >>>>>>>>> local/var/lib/sage/: >>>>>>>>> >>>>>>>>> % ls local/var/lib/sage/ >>>>>>>>> installed scripts venv-python3.12 >>>>>>>>> >>>>>>>>> >>>>>>>>> On Thursday, January 2, 2025 at 10:02:22 PM UTC-8 dim...@gmail.com >>>>>>>>> wrote: >>>>>>>>>> >>>>>>>>>> /usr/bin/python3 you end up using is no good for using with Sage >>>>>>>>>> (and unfortunately our >>>>>>>>>> ./configure doesn't see it), that's why. >>>>>>>>>> >>>>>>>>>> I suggested to install python3.12 in Homebrew and use it instead. >>>>>>>>>> (because building Sage's python is broken on your macOS version, too, >>>>>>>>>> there aren't many other >>>>>>>>>> easy options) >>>>>>>>>> >>>>>>>>>> Dima >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> On Thursday, January 2, 2025 at 10:27:48 PM UTC-6 pgal...@gmail.com >>>>>>>>>> wrote: >>>>>>>>>>> >>>>>>>>>>> Hi, >>>>>>>>>>> >>>>>>>>>>> I am running into the following problem when building Sage from >>>>>>>>>>> source. It hangs while installing the package >>>>>>>>>>> ``sagemath_doc_html-none``. It shows a warning about urllib3 >>>>>>>>>>> incompatibility with OpenSSL 1.1.1+. >>>>>>>>>>> >>>>>>>>>>> I am on an M4 Macbook Pro (2024), Mac OS Sequoia 15.2, using >>>>>>>>>>> Homebrew Python 3.13.1. >>>>>>>>>>> >>>>>>>>>>> Below is what appears in the log file, but the terminal actually >>>>>>>>>>> hangs on the line >>>>>>>>>>> >>>>>>>>>>> [spkg-install] warnings.warn( >>>>>>>>>>> >>>>>>>>>>> [spkg-install] >>>>>>>>>>> /Users/user/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/urllib3/__init__.py:34: >>>>>>>>>>> NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, >>>>>>>>>>> currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: >>>>>>>>>>> https://github.com/urllib3/urllib3/issues/3020 >>>>>>>>>>> [spkg-install] warnings.warn( >>>>>>>>>>> Setting up build directory >>>>>>>>>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none >>>>>>>>>>> Host system: Darwin PG-Mac-2.local 24.2.0 Darwin Kernel Version >>>>>>>>>>> 24.2.0: Fri Dec 6 19:03:40 PST 2024; >>>>>>>>>>> root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 arm64 >>>>>>>>>>> C compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), >>>>>>>>>>> Target: arm64-apple-darwin24.2.0, Thread model: posix, >>>>>>>>>>> InstalledDir: /Library/Developer/CommandLineTools/usr/bin >>>>>>>>>>> No stamp file for package 'sagemath_doc_html' in >>>>>>>>>>> /Users/user/sage/sage/local/var/lib/sage/installed >>>>>>>>>>> No spkg-legacy-uninstall script; nothing to do >>>>>>>>>>> [spkg-install] mkdir -p en/reference/repl >>>>>>>>>>> [spkg-install] sage -advanced > en/reference/repl/options.txt >>>>>>>>>>> [spkg-install] >>>>>>>>>>> /Users/user/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/urllib3/__init__.py:34: >>>>>>>>>>> NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, >>>>>>>>>>> currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: >>>>>>>>>>> https://github.com/urllib3/urllib3/issues/3020 >>>>>>>>>>> [spkg-install] warnings.warn( >>>>>>>>>>> [spkg-install] make doc-inventory--reference-references >>>>>>>>>>> [spkg-install] sage --docbuild --no-pdf-links reference/references >>>>>>>>>>> inventory >>>>>>>>>>> [spkg-install] >>>>>>>>>>> /Users/user/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/urllib3/__init__.py:34: >>>>>>>>>>> NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, >>>>>>>>>>> currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: >>>>>>>>>>> https://github.com/urllib3/urllib3/issues/3020 >>>>>>>>>>> [spkg-install] warnings.warn( >>>>>>>>>>> [spkg-install] [reference] Interrupting Mathematica... >>>>>>>>>>> [spkg-install] [reference] Interrupted! >>>>>>>>>>> [spkg-install] make[5]: *** [doc-inventory-reference] Interrupt: 2 >>>>>>>>>>> ************************************************************************ >>>>>>>>>>> Error installing package sagemath_doc_html-none >>>>>>>>>>> ************************************************************************ >>>>>>>>>>> Please email sage-devel (http://groups.google.com/group/sage-devel) >>>>>>>>>>> explaining the problem and including the log files >>>>>>>>>>> /Users/user/sage/sage/logs/pkgs/sagemath_doc_html-none.log >>>>>>>>>>> and >>>>>>>>>>> /Users/user/sage/sage/config.log >>>>>>>>>>> Describe your computer, operating system, etc. >>>>>>>>>>> If you want to try to fix the problem yourself, *don't* just cd to >>>>>>>>>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none >>>>>>>>>>> and type 'make' or whatever is appropriate. >>>>>>>>>>> Instead, the following commands setup all environment variables >>>>>>>>>>> correctly and load a subshell for you to debug the error: >>>>>>>>>>> (cd >>>>>>>>>>> '/Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none' >>>>>>>>>>> && '/Users/user/sage/sage/sage' --buildsh) >>>>>>>>>>> When you are done debugging, you can type "exit" to leave the >>>>>>>>>>> subshell. >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> -- >>>>>>>>>>> Best, >>>>>>>>>>> Pasha > > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-support+unsubscr...@googlegroups.com. > To view this discussion visit > https://groups.google.com/d/msgid/sage-support/e3c7396c-c8a5-4c79-ad1f-05e5ae04982fn%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion visit https://groups.google.com/d/msgid/sage-support/CAAWYfq3srkWT4K2jLFz-gS%3DSU6RMHpZTVWJXnpJ%3DR0fHzXRhsg%40mail.gmail.com.
