It was installed via homebrew, same as python3.12:
$ which python3.9 /opt/homebrew/bin/python3.9 
​

On Thursday, January 9, 2025 at 7:59:39 AM UTC-8 dim...@gmail.com wrote:

> Thanks. So, what's the output of 
>
> which python3.9
> in your case? And where does it come from? I suppose the issue lies in 
> multiptocessing/multithreading support  in Python, which eveloved a lot 
> since 3.9.
>
> More Pythons to try might be from https://www.python.org/downloads/ (it 
> would be good to know which of these 3.9-3.12 work)
>
> On Thursday, January 9, 2025 at 2:51:05 AM UTC-6 pgal...@gmail.com wrote:
>
>> Huh, the problem got completely solved just by switching to Python 9! 
>> Thanks a lot for the help!
>>
>> $ make distclean $ ./configure --with-python=`which python3.9` $ make -s 
>> V=0 -j1 
>> ​
>> ...
>>
>> [tzlocal-5.0.1] installing. Log file: 
>> /Users/user/sage/sage/logs/pkgs/tzlocal-5.0.1.log [tzlocal-5.0.1] 
>> successfully installed. Sage build/upgrade complete! real 101m19.420s 
>> user 96m41.546s sys 14m53.704s PG-Mac-2:sage user$ ./sage 
>> ┌────────────────────────────────────────────────────────────────────┐ │ 
>> SageMath version 10.6.beta3, Release Date: 2025-01-04 │ │ Using Python 
>> 3.9.21. Type "help()" for help. │ 
>> └────────────────────────────────────────────────────────────────────┘ 
>> ┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓ ┃ 
>> Warning: this is a prerelease version, and it may be unstable. ┃ 
>> ┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛ 
>> sage: sin(pi/3) 1/2*sqrt(3) 
>> ​
>>
>>
>> On Tuesday, January 7, 2025 at 8:52:57 AM UTC-8 Pavel Galashin wrote:
>>
>>> That doesn't seem to help:
>>>
>>> [sagemath_doc_html-none] Setting up build directory 
>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none 
>>> [sagemath_doc_html-none] Host system: Darwin PG-Mac-2.local 24.2.0 
>>> Darwin Kernel Version 24.2.0: Fri Dec 6 19:03:40 PST 2024; root:xnu-
>>> 11215.61.5~2/RELEASE_ARM64_T6041 arm64 [sagemath_doc_html-none] C 
>>> compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), Target: 
>>> arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: 
>>> /Library/Developer/CommandLineTools/usr/bin [sagemath_doc_html-none] No 
>>> stamp file for package 'sagemath_doc_html' in 
>>> /Users/user/sage/sage/local/var/lib/sage/installed [sagemath_doc_html-none] 
>>> No spkg-legacy-uninstall script; nothing to do [sagemath_doc_html-none] 
>>> [spkg-install] mkdir -p en/reference/repl [sagemath_doc_html-none] 
>>> [spkg-install] sage -advanced > en/reference/repl/options.txt 
>>> [sagemath_doc_html-none] [spkg-install] make 
>>> doc-inventory--reference-references [sagemath_doc_html-none] [spkg-install] 
>>> sage --docbuild --no-pdf-links reference/references inventory 
>>> ​
>>>  
>>>
>>> sagemath_doc_html-none.log:
>>>
>>> Setting up build directory 
>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none Host 
>>> system: Darwin PG-Mac-2.local 24.2.0 Darwin Kernel Version 24.2.0: Fri 
>>> Dec 6 19:03:40 PST 2024; root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 
>>> arm64 C compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), 
>>> Target: arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: 
>>> /Library/Developer/CommandLineTools/usr/bin No stamp file for package 
>>> 'sagemath_doc_html' in 
>>> /Users/user/sage/sage/local/var/lib/sage/installed No spkg-legacy-uninstall 
>>> script; nothing to do [spkg-install] mkdir -p en/reference/repl 
>>> [spkg-install] sage -advanced > en/reference/repl/options.txt 
>>> [spkg-install] make doc-inventory--reference-references [spkg-install] sage 
>>> --docbuild --no-pdf-links reference/references inventory Setting up build 
>>> directory 
>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none Host 
>>> system: Darwin PG-Mac-2.local 24.2.0 Darwin Kernel Version 24.2.0: Fri 
>>> Dec 6 19:03:40 PST 2024; root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 
>>> arm64 C compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), 
>>> Target: arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: 
>>> /Library/Developer/CommandLineTools/usr/bin No stamp file for package 
>>> 'sagemath_doc_html' in 
>>> /Users/user/sage/sage/local/var/lib/sage/installed No spkg-legacy-uninstall 
>>> script; nothing to do [spkg-install] mkdir -p en/reference/repl 
>>> [spkg-install] sage -advanced > en/reference/repl/options.txt 
>>> [spkg-install] make doc-inventory--reference-references [spkg-install] sage 
>>> --docbuild --no-pdf-links reference/references inventory 
>>> ​
>>> On Tuesday, January 7, 2025 at 8:13:14 AM UTC-8 dim...@gmail.com wrote:
>>>
>>>> Our docbuilder isn't great, it uses some custom outdated  tricks for
>>>> parallel building. Switching to a more standard sphinx setup is 
>>>> overdue...
>>>>
>>>> Try cleaning docs by
>>>>
>>>> make doc-clean
>>>>
>>>> and then run
>>>>
>>>> make -j1
>>>>
>>>> On Tuesday, January 7, 2025 at 2:56:47 AM UTC-6 pgal...@gmail.com 
>>>> wrote:
>>>>
>>>>> Thank you for the advice! I used python3.12 and the warning about 
>>>>> urllib3 disappeared, but make still hangs (for > 12 hours) on the same 
>>>>> package ``sagemath_doc_html-none``.
>>>>>
>>>>> [sagemath_doc_html-none] Setting up build directory 
>>>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none 
>>>>> [sagemath_doc_html-none] Host system: Darwin PG-Mac-2.local 24.2.0 
>>>>> Darwin Kernel Version 24.2.0: Fri Dec 6 19:03:40 PST 2024; root:xnu-
>>>>> 11215.61.5~2/RELEASE_ARM64_T6041 arm64 [sagemath_doc_html-none] C 
>>>>> compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), 
>>>>> Target: arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: 
>>>>> /Library/Developer/CommandLineTools/usr/bin [sagemath_doc_html-none] No 
>>>>> stamp file for package 'sagemath_doc_html' in 
>>>>> /Users/user/sage/sage/local/var/lib/sage/installed 
>>>>> [sagemath_doc_html-none] 
>>>>> No spkg-legacy-uninstall script; nothing to do 
>>>>> [sagemath_doc_html-none] [spkg-install] mkdir -p en/reference/repl 
>>>>> [sagemath_doc_html-none] [spkg-install] sage -advanced > 
>>>>> en/reference/repl/options.txt [sagemath_doc_html-none] [spkg-install] 
>>>>> make 
>>>>> doc-inventory--reference-references [sagemath_doc_html-none] 
>>>>> [spkg-install] 
>>>>> sage --docbuild --no-pdf-links reference/references inventory ^Z [6]+ 
>>>>> Stopped make 
>>>>> ​
>>>>>
>>>>>
>>>>>
>>>>> On Friday, January 3, 2025 at 10:01:34 AM UTC-8 John H Palmieri wrote:
>>>>>
>>>>>> To expand on Dima's answer: Homebrew's Python 3.13 is too new to 
>>>>>> build Sage, so Sage will reject it. The built-in Python 3.9 is, as Dima 
>>>>>> says, no good for use with Sage. So install Homebrew's python 3.12, do 
>>>>>> "make distclean", and then use
>>>>>>
>>>>>>    ./configure --with-python=" fill in path to python3.12 "
>>>>>>
>>>>>> or you can do precisely this:
>>>>>>
>>>>>>   ./configure --with-python=`which python3.12`
>>>>>>
>>>>>> This should use Homebrew's Python 3.12 (assuming you've installed it) 
>>>>>> even if you've also installed newer versions with Homebrew. You can tell 
>>>>>> which version of Python is being used by the symlink "venv" in the 
>>>>>> top-level Sage directory:
>>>>>>
>>>>>> % ls -l venv
>>>>>> lrwxr-xr-x  1 palmieri  staff  34 Dec 30 15:41 venv -> 
>>>>>> local/var/lib/sage/venv-python3.12
>>>>>>
>>>>>> and also by the name of the directory starting "venv" in 
>>>>>> local/var/lib/sage/:
>>>>>>
>>>>>> % ls local/var/lib/sage/               
>>>>>> installed       scripts         venv-python3.12
>>>>>>
>>>>>>
>>>>>> On Thursday, January 2, 2025 at 10:02:22 PM UTC-8 dim...@gmail.com 
>>>>>> wrote:
>>>>>>
>>>>>>> /usr/bin/python3 you end up using is no good for using with Sage 
>>>>>>> (and unfortunately our
>>>>>>> ./configure doesn't see it), that's why.
>>>>>>>
>>>>>>> I suggested to install python3.12 in Homebrew and use it instead.
>>>>>>> (because building Sage's python is broken on your macOS version, too,
>>>>>>> there aren't many other
>>>>>>> easy options)
>>>>>>>
>>>>>>> Dima
>>>>>>>
>>>>>>>
>>>>>>> On Thursday, January 2, 2025 at 10:27:48 PM UTC-6 pgal...@gmail.com 
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Hi,
>>>>>>>>
>>>>>>>> I am running into the following problem when building Sage from 
>>>>>>>> source. It hangs while installing the package 
>>>>>>>> ``sagemath_doc_html-none``. 
>>>>>>>> It shows a warning about urllib3 incompatibility with OpenSSL 1.1.1+.
>>>>>>>>
>>>>>>>> I am on an M4 Macbook Pro (2024), Mac OS Sequoia 15.2, using 
>>>>>>>> Homebrew Python 3.13.1.
>>>>>>>>
>>>>>>>> Below is what appears in the log file, but the terminal actually 
>>>>>>>> hangs on the line
>>>>>>>>
>>>>>>>> [spkg-install] warnings.warn(
>>>>>>>>
>>>>>>>> [spkg-install] 
>>>>>>>> /Users/user/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/urllib3/__init__.py:34:
>>>>>>>>  NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently 
>>>>>>>> the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: 
>>>>>>>> https://github.com/urllib3/urllib3/issues/3020
>>>>>>>> [spkg-install]   warnings.warn(
>>>>>>>> Setting up build directory 
>>>>>>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none
>>>>>>>> Host system: Darwin PG-Mac-2.local 24.2.0 Darwin Kernel Version 
>>>>>>>> 24.2.0: Fri Dec  6 19:03:40 PST 2024; 
>>>>>>>> root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 arm64
>>>>>>>> C compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), 
>>>>>>>> Target: arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: 
>>>>>>>> /Library/Developer/CommandLineTools/usr/bin
>>>>>>>> No stamp file for package 'sagemath_doc_html' in 
>>>>>>>> /Users/user/sage/sage/local/var/lib/sage/installed
>>>>>>>> No spkg-legacy-uninstall script; nothing to do
>>>>>>>> [spkg-install] mkdir -p en/reference/repl
>>>>>>>> [spkg-install] sage -advanced > en/reference/repl/options.txt
>>>>>>>> [spkg-install] 
>>>>>>>> /Users/user/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/urllib3/__init__.py:34:
>>>>>>>>  NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently 
>>>>>>>> the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: 
>>>>>>>> https://github.com/urllib3/urllib3/issues/3020
>>>>>>>> [spkg-install]   warnings.warn(
>>>>>>>> [spkg-install] make doc-inventory--reference-references
>>>>>>>> [spkg-install] sage --docbuild --no-pdf-links reference/references 
>>>>>>>> inventory 
>>>>>>>> [spkg-install] 
>>>>>>>> /Users/user/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/urllib3/__init__.py:34:
>>>>>>>>  NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently 
>>>>>>>> the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: 
>>>>>>>> https://github.com/urllib3/urllib3/issues/3020
>>>>>>>> [spkg-install]   warnings.warn(
>>>>>>>> [spkg-install] [reference] Interrupting Mathematica...
>>>>>>>> [spkg-install] [reference] Interrupted!
>>>>>>>> [spkg-install] make[5]: *** [doc-inventory-reference] Interrupt: 2
>>>>>>>> ************************************************************************
>>>>>>>> Error installing package sagemath_doc_html-none
>>>>>>>> ************************************************************************
>>>>>>>> Please email sage-devel (http://groups.google.com/group/sage-devel)
>>>>>>>> explaining the problem and including the log files
>>>>>>>>   /Users/user/sage/sage/logs/pkgs/sagemath_doc_html-none.log
>>>>>>>> and
>>>>>>>>   /Users/user/sage/sage/config.log
>>>>>>>> Describe your computer, operating system, etc.
>>>>>>>> If you want to try to fix the problem yourself, *don't* just cd to
>>>>>>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none 
>>>>>>>> and type 'make' or whatever is appropriate.
>>>>>>>> Instead, the following commands setup all environment variables
>>>>>>>> correctly and load a subshell for you to debug the error:
>>>>>>>>   (cd 
>>>>>>>> '/Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none'
>>>>>>>>  && '/Users/user/sage/sage/sage' --buildsh)
>>>>>>>> When you are done debugging, you can type "exit" to leave the subshell.
>>>>>>>>
>>>>>>>>
>>>>>>>> -- 
>>>>>>>> Best,
>>>>>>>> Pasha
>>>>>>>>
>>>>>>>

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