Huh, the problem got completely solved just by switching to Python 9! 
Thanks a lot for the help!

$ make distclean $ ./configure --with-python=`which python3.9` $ make -s V=0 
-j1 
​
...

[tzlocal-5.0.1] installing. Log file: 
/Users/user/sage/sage/logs/pkgs/tzlocal-5.0.1.log [tzlocal-5.0.1] 
successfully installed. Sage build/upgrade complete! real 101m19.420s user 
96m41.546s sys 14m53.704s PG-Mac-2:sage user$ ./sage 
┌────────────────────────────────────────────────────────────────────┐ │ 
SageMath version 10.6.beta3, Release Date: 2025-01-04 │ │ Using Python 3.9.
21. Type "help()" for help. │ 
└────────────────────────────────────────────────────────────────────┘ 
┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓ ┃ 
Warning: this is a prerelease version, and it may be unstable. ┃ 
┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛ 
sage: sin(pi/3) 1/2*sqrt(3) 
​


On Tuesday, January 7, 2025 at 8:52:57 AM UTC-8 Pavel Galashin wrote:

> That doesn't seem to help:
>
> [sagemath_doc_html-none] Setting up build directory 
> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none 
> [sagemath_doc_html-none] Host system: Darwin PG-Mac-2.local 24.2.0 Darwin 
> Kernel Version 24.2.0: Fri Dec 6 19:03:40 PST 2024; 
> root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 
> arm64 [sagemath_doc_html-none] C compiler: gcc, Apple clang version 16.0.0 
> (clang-1600.0.26.6), Target: arm64-apple-darwin24.2.0, Thread model: 
> posix, InstalledDir: /Library/Developer/CommandLineTools/usr/bin 
> [sagemath_doc_html-none] No stamp file for package 'sagemath_doc_html' in 
> /Users/user/sage/sage/local/var/lib/sage/installed [sagemath_doc_html-none] 
> No spkg-legacy-uninstall script; nothing to do [sagemath_doc_html-none] 
> [spkg-install] mkdir -p en/reference/repl [sagemath_doc_html-none] 
> [spkg-install] sage -advanced > en/reference/repl/options.txt 
> [sagemath_doc_html-none] [spkg-install] make 
> doc-inventory--reference-references [sagemath_doc_html-none] [spkg-install] 
> sage --docbuild --no-pdf-links reference/references inventory 
> ​
>  
>
> sagemath_doc_html-none.log:
>
> Setting up build directory 
> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none Host 
> system: Darwin PG-Mac-2.local 24.2.0 Darwin Kernel Version 24.2.0: Fri 
> Dec 6 19:03:40 PST 2024; root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 arm64 
> C compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), Target: 
> arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: 
> /Library/Developer/CommandLineTools/usr/bin No stamp file for package 
> 'sagemath_doc_html' in /Users/user/sage/sage/local/var/lib/sage/installed 
> No spkg-legacy-uninstall script; nothing to do [spkg-install] mkdir -p 
> en/reference/repl [spkg-install] sage -advanced > 
> en/reference/repl/options.txt [spkg-install] make 
> doc-inventory--reference-references [spkg-install] sage --docbuild 
> --no-pdf-links reference/references inventory Setting up build directory 
> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none Host 
> system: Darwin PG-Mac-2.local 24.2.0 Darwin Kernel Version 24.2.0: Fri 
> Dec 6 19:03:40 PST 2024; root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 arm64 
> C compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), Target: 
> arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: 
> /Library/Developer/CommandLineTools/usr/bin No stamp file for package 
> 'sagemath_doc_html' in /Users/user/sage/sage/local/var/lib/sage/installed 
> No spkg-legacy-uninstall script; nothing to do [spkg-install] mkdir -p 
> en/reference/repl [spkg-install] sage -advanced > 
> en/reference/repl/options.txt [spkg-install] make 
> doc-inventory--reference-references [spkg-install] sage --docbuild 
> --no-pdf-links reference/references inventory 
> ​
> On Tuesday, January 7, 2025 at 8:13:14 AM UTC-8 dim...@gmail.com wrote:
>
>> Our docbuilder isn't great, it uses some custom outdated  tricks for
>> parallel building. Switching to a more standard sphinx setup is overdue...
>>
>> Try cleaning docs by
>>
>> make doc-clean
>>
>> and then run
>>
>> make -j1
>>
>> On Tuesday, January 7, 2025 at 2:56:47 AM UTC-6 pgal...@gmail.com wrote:
>>
>>> Thank you for the advice! I used python3.12 and the warning about 
>>> urllib3 disappeared, but make still hangs (for > 12 hours) on the same 
>>> package ``sagemath_doc_html-none``.
>>>
>>> [sagemath_doc_html-none] Setting up build directory 
>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none 
>>> [sagemath_doc_html-none] Host system: Darwin PG-Mac-2.local 24.2.0 
>>> Darwin Kernel Version 24.2.0: Fri Dec 6 19:03:40 PST 2024; root:xnu-
>>> 11215.61.5~2/RELEASE_ARM64_T6041 arm64 [sagemath_doc_html-none] C 
>>> compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), Target: 
>>> arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: 
>>> /Library/Developer/CommandLineTools/usr/bin [sagemath_doc_html-none] No 
>>> stamp file for package 'sagemath_doc_html' in 
>>> /Users/user/sage/sage/local/var/lib/sage/installed [sagemath_doc_html-none] 
>>> No spkg-legacy-uninstall script; nothing to do [sagemath_doc_html-none] 
>>> [spkg-install] mkdir -p en/reference/repl [sagemath_doc_html-none] 
>>> [spkg-install] sage -advanced > en/reference/repl/options.txt 
>>> [sagemath_doc_html-none] [spkg-install] make 
>>> doc-inventory--reference-references [sagemath_doc_html-none] [spkg-install] 
>>> sage --docbuild --no-pdf-links reference/references inventory ^Z [6]+ 
>>> Stopped make 
>>> ​
>>>
>>>
>>>
>>> On Friday, January 3, 2025 at 10:01:34 AM UTC-8 John H Palmieri wrote:
>>>
>>>> To expand on Dima's answer: Homebrew's Python 3.13 is too new to build 
>>>> Sage, so Sage will reject it. The built-in Python 3.9 is, as Dima says, no 
>>>> good for use with Sage. So install Homebrew's python 3.12, do "make 
>>>> distclean", and then use
>>>>
>>>>    ./configure --with-python=" fill in path to python3.12 "
>>>>
>>>> or you can do precisely this:
>>>>
>>>>   ./configure --with-python=`which python3.12`
>>>>
>>>> This should use Homebrew's Python 3.12 (assuming you've installed it) 
>>>> even if you've also installed newer versions with Homebrew. You can tell 
>>>> which version of Python is being used by the symlink "venv" in the 
>>>> top-level Sage directory:
>>>>
>>>> % ls -l venv
>>>> lrwxr-xr-x  1 palmieri  staff  34 Dec 30 15:41 venv -> 
>>>> local/var/lib/sage/venv-python3.12
>>>>
>>>> and also by the name of the directory starting "venv" in 
>>>> local/var/lib/sage/:
>>>>
>>>> % ls local/var/lib/sage/               
>>>> installed       scripts         venv-python3.12
>>>>
>>>>
>>>> On Thursday, January 2, 2025 at 10:02:22 PM UTC-8 dim...@gmail.com 
>>>> wrote:
>>>>
>>>>> /usr/bin/python3 you end up using is no good for using with Sage (and 
>>>>> unfortunately our
>>>>> ./configure doesn't see it), that's why.
>>>>>
>>>>> I suggested to install python3.12 in Homebrew and use it instead.
>>>>> (because building Sage's python is broken on your macOS version, too,
>>>>> there aren't many other
>>>>> easy options)
>>>>>
>>>>> Dima
>>>>>
>>>>>
>>>>> On Thursday, January 2, 2025 at 10:27:48 PM UTC-6 pgal...@gmail.com 
>>>>> wrote:
>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> I am running into the following problem when building Sage from 
>>>>>> source. It hangs while installing the package 
>>>>>> ``sagemath_doc_html-none``. 
>>>>>> It shows a warning about urllib3 incompatibility with OpenSSL 1.1.1+.
>>>>>>
>>>>>> I am on an M4 Macbook Pro (2024), Mac OS Sequoia 15.2, using Homebrew 
>>>>>> Python 3.13.1.
>>>>>>
>>>>>> Below is what appears in the log file, but the terminal actually 
>>>>>> hangs on the line
>>>>>>
>>>>>> [spkg-install] warnings.warn(
>>>>>>
>>>>>> [spkg-install] 
>>>>>> /Users/user/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/urllib3/__init__.py:34:
>>>>>>  NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently 
>>>>>> the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: 
>>>>>> https://github.com/urllib3/urllib3/issues/3020
>>>>>> [spkg-install]   warnings.warn(
>>>>>> Setting up build directory 
>>>>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none
>>>>>> Host system: Darwin PG-Mac-2.local 24.2.0 Darwin Kernel Version 24.2.0: 
>>>>>> Fri Dec  6 19:03:40 PST 2024; root:xnu-11215.61.5~2/RELEASE_ARM64_T6041 
>>>>>> arm64
>>>>>> C compiler: gcc, Apple clang version 16.0.0 (clang-1600.0.26.6), Target: 
>>>>>> arm64-apple-darwin24.2.0, Thread model: posix, InstalledDir: 
>>>>>> /Library/Developer/CommandLineTools/usr/bin
>>>>>> No stamp file for package 'sagemath_doc_html' in 
>>>>>> /Users/user/sage/sage/local/var/lib/sage/installed
>>>>>> No spkg-legacy-uninstall script; nothing to do
>>>>>> [spkg-install] mkdir -p en/reference/repl
>>>>>> [spkg-install] sage -advanced > en/reference/repl/options.txt
>>>>>> [spkg-install] 
>>>>>> /Users/user/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/urllib3/__init__.py:34:
>>>>>>  NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently 
>>>>>> the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: 
>>>>>> https://github.com/urllib3/urllib3/issues/3020
>>>>>> [spkg-install]   warnings.warn(
>>>>>> [spkg-install] make doc-inventory--reference-references
>>>>>> [spkg-install] sage --docbuild --no-pdf-links reference/references 
>>>>>> inventory 
>>>>>> [spkg-install] 
>>>>>> /Users/user/sage/sage/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/urllib3/__init__.py:34:
>>>>>>  NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently 
>>>>>> the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: 
>>>>>> https://github.com/urllib3/urllib3/issues/3020
>>>>>> [spkg-install]   warnings.warn(
>>>>>> [spkg-install] [reference] Interrupting Mathematica...
>>>>>> [spkg-install] [reference] Interrupted!
>>>>>> [spkg-install] make[5]: *** [doc-inventory-reference] Interrupt: 2
>>>>>> ************************************************************************
>>>>>> Error installing package sagemath_doc_html-none
>>>>>> ************************************************************************
>>>>>> Please email sage-devel (http://groups.google.com/group/sage-devel)
>>>>>> explaining the problem and including the log files
>>>>>>   /Users/user/sage/sage/logs/pkgs/sagemath_doc_html-none.log
>>>>>> and
>>>>>>   /Users/user/sage/sage/config.log
>>>>>> Describe your computer, operating system, etc.
>>>>>> If you want to try to fix the problem yourself, *don't* just cd to
>>>>>> /Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none 
>>>>>> and type 'make' or whatever is appropriate.
>>>>>> Instead, the following commands setup all environment variables
>>>>>> correctly and load a subshell for you to debug the error:
>>>>>>   (cd 
>>>>>> '/Users/user/sage/sage/local/var/tmp/sage/build/sagemath_doc_html-none' 
>>>>>> && '/Users/user/sage/sage/sage' --buildsh)
>>>>>> When you are done debugging, you can type "exit" to leave the subshell.
>>>>>>
>>>>>>
>>>>>> -- 
>>>>>> Best,
>>>>>> Pasha
>>>>>>
>>>>>

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