On Sat, Aug 28, 2021 at 10:57 PM Lance Edward Miller <lem...@uark.edu> wrote: > > To whom it may concern, > > I'm installing sage from the synaptic package manager on Linux Mint 20.1. > The package is for Sage 9.0, but the app does not run. Following is the crash > report, any advice on how to best resolve (uninstall and install from > source?) is appreciated:
This has to be reported to Linux Mint - we don't do packaging for particular Linux distributions, and it looks like a packaging error, not anything we can help with. You can install Sage in several other ways: https://doc.sagemath.org/html/en/installation/index.html > > > *************************************************************************** > > IPython post-mortem report > > {'commit_hash': '<not found>', > 'commit_source': '(none found)', > 'default_encoding': 'utf-8', > 'ipython_path': '/usr/lib/python3/dist-packages/IPython', > 'ipython_version': '7.13.0', > 'os_name': 'posix', > 'platform': 'Linux-5.4.0-81-generic-x86_64-with-glibc2.29', > 'sys_executable': '/usr/bin/python3', > 'sys_platform': 'linux', > 'sys_version': '3.8.10 (default, Jun 2 2021, 10:49:15) \n[GCC 9.4.0]'} > > *************************************************************************** > > > > *************************************************************************** > > Crash traceback: > > --------------------------------------------------------------------------- > --------------------------------------------------------------------------- > ImportError Python 3.8.10: /usr/bin/python3 > Sat Aug 28 16:48:31 2021 > A problem occurred executing Python code. Here is the sequence of function > calls leading up to the error, with the most recent (innermost) call last. > /usr/share/sagemath/bin/sage-ipython in <module> > 1 #!/usr/bin/env sage-python > 2 # -*- coding: utf-8 -*- > 3 """ > 4 Sage IPython startup script. > 5 """ > 6 > 7 # Display startup banner. Do this before anything else to give the > user > 8 # early feedback that Sage is starting. > 9 from sage.misc.banner import banner > 10 banner() > 11 > 12 from sage.repl.interpreter import SageTerminalApp > 13 > 14 app = SageTerminalApp.instance() > ---> 15 app.initialize() > global app.initialize = <bound method TerminalIPythonApp.initialize > of <sage.repl.interpreter.SageTerminalApp object at 0x7f6700317eb0>> > 16 app.start() > > <decorator-gen-113> in initialize(self=<sage.repl.interpreter.SageTerminalApp > object>, argv=None) > > /usr/lib/python3/dist-packages/traitlets/config/application.py in > catch_config_error(method=<function TerminalIPythonApp.initialize>, > app=<sage.repl.interpreter.SageTerminalApp object>, *args=(None,), > **kwargs={}) > 72 TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR = False > 73 else: > 74 raise ValueError("Unsupported value for environment variable: > 'TRAITLETS_APPLICATION_RAISE_CONFIG_FILE_ERROR' is set to '%s' which is none > of {'0', '1', 'false', 'true', ''}."% _envvar ) > 75 > 76 > 77 @decorator > 78 def catch_config_error(method, app, *args, **kwargs): > 79 """Method decorator for catching invalid config > (Trait/ArgumentErrors) during init. > 80 > 81 On a TraitError (generally caused by bad config), this will print > the trait's > 82 message, and exit the app. > 83 > 84 For use on init methods, to prevent invoking excepthook on > invalid input. > 85 """ > 86 try: > ---> 87 return method(app, *args, **kwargs) > method = <function TerminalIPythonApp.initialize at 0x7f66febbf5e0> > app = <sage.repl.interpreter.SageTerminalApp object at 0x7f6700317eb0> > args = (None,) > kwargs = {} > 88 except (TraitError, ArgumentError) as e: > 89 app.print_help() > 90 app.log.fatal("Bad config encountered during initialization:") > 91 app.log.fatal(str(e)) > 92 app.log.debug("Config at the time: %s", app.config) > 93 app.exit(1) > 94 > 95 > 96 class ApplicationError(Exception): > 97 pass > 98 > 99 > 100 class LevelFormatter(logging.Formatter): > 101 """Formatter with additional `highlevel` record > 102 > > /usr/lib/python3/dist-packages/IPython/terminal/ipapp.py in > initialize(self=<sage.repl.interpreter.SageTerminalApp object>, argv=None) > 302 > 303 return super(TerminalIPythonApp, > self).parse_command_line(argv) > 304 > 305 @catch_config_error > 306 def initialize(self, argv=None): > 307 """Do actions after construct, but before starting the app.""" > 308 super(TerminalIPythonApp, self).initialize(argv) > 309 if self.subapp is not None: > 310 # don't bother initializing further, starting subapp > 311 return > 312 # print self.extra_args > 313 if self.extra_args and not self.something_to_run: > 314 self.file_to_run = self.extra_args[0] > 315 self.init_path() > 316 # create the shell > --> 317 self.init_shell() > self.init_shell = <bound method SageTerminalApp.init_shell of > <sage.repl.interpreter.SageTerminalApp object at 0x7f6700317eb0>> > 318 # and draw the banner > 319 self.init_banner() > 320 # Now a variety of things that happen after the banner is > printed. > 321 self.init_gui_pylab() > 322 self.init_extensions() > 323 self.init_code() > 324 > 325 def init_shell(self): > 326 """initialize the InteractiveShell instance""" > 327 # Create an InteractiveShell instance. > 328 # shell.display_banner should always be False for the terminal > 329 # based app, because we call shell.show_banner() by hand below > 330 # so the banner shows *before* all extension loading stuff. > 331 self.shell = > self.interactive_shell_class.instance(parent=self, > 332 profile_dir=self.profile_dir, > > /usr/lib/python3/dist-packages/sage/repl/interpreter.py in > init_shell(self=<sage.repl.interpreter.SageTerminalApp object>) > 727 self.shell.has_sage_extensions = SAGE_EXTENSION in > self.extensions > 728 > 729 # Load the %lprun extension if available > 730 try: > 731 import line_profiler > 732 except ImportError: > 733 pass > 734 else: > 735 self.extensions.append('line_profiler') > 736 > 737 if self.shell.has_sage_extensions: > 738 self.extensions.remove(SAGE_EXTENSION) > 739 > 740 # load sage extension here to get a crash if > 741 # something is wrong with the sage library > --> 742 > self.shell.extension_manager.load_extension(SAGE_EXTENSION) > self.shell.extension_manager.load_extension = <bound method > ExtensionManager.load_extension of <IPython.core.extensions.ExtensionManager > object at 0x7f66fcd10490>> > global SAGE_EXTENSION = 'sage' > 743 > 744 > > /usr/lib/python3/dist-packages/IPython/core/extensions.py in > load_extension(self=<IPython.core.extensions.ExtensionManager object>, > module_str='sage') > 72 if module_str in self.loaded: > 73 return "already loaded" > 74 > 75 from IPython.utils.syspathcontext import prepended_to_syspath > 76 > 77 with self.shell.builtin_trap: > 78 if module_str not in sys.modules: > 79 with prepended_to_syspath(self.ipython_extension_dir): > 80 mod = import_module(module_str) > 81 if > mod.__file__.startswith(self.ipython_extension_dir): > 82 print(("Loading extensions from {dir} is > deprecated. " > 83 "We recommend managing extensions like > any " > 84 "other Python packages, in > site-packages.").format( > 85 > dir=compress_user(self.ipython_extension_dir))) > 86 mod = sys.modules[module_str] > ---> 87 if self._call_load_ipython_extension(mod): > self._call_load_ipython_extension = <bound method > ExtensionManager._call_load_ipython_extension of > <IPython.core.extensions.ExtensionManager object at 0x7f66fcd10490>> > mod = <module 'sage' from > '/usr/lib/python3/dist-packages/sage/__init__.py'> > 88 self.loaded.add(module_str) > 89 else: > 90 return "no load function" > 91 > 92 def unload_extension(self, module_str): > 93 """Unload an IPython extension by its module name. > 94 > 95 This function looks up the extension's name in > ``sys.modules`` and > 96 simply calls ``mod.unload_ipython_extension(self)``. > 97 > 98 Returns the string "no unload function" if the extension > doesn't define > 99 a function to unload itself, "not loaded" if the extension > isn't loaded, > 100 otherwise None. > 101 """ > 102 if module_str not in self.loaded: > > /usr/lib/python3/dist-packages/IPython/core/extensions.py in > _call_load_ipython_extension(self=<IPython.core.extensions.ExtensionManager > object>, mod=<module 'sage' from > '/usr/lib/python3/dist-packages/sage/__init__.py'>) > 119 """ > 120 from IPython.utils.syspathcontext import prepended_to_syspath > 121 > 122 if (module_str in self.loaded) and (module_str in > sys.modules): > 123 self.unload_extension(module_str) > 124 mod = sys.modules[module_str] > 125 with prepended_to_syspath(self.ipython_extension_dir): > 126 reload(mod) > 127 if self._call_load_ipython_extension(mod): > 128 self.loaded.add(module_str) > 129 else: > 130 self.load_extension(module_str) > 131 > 132 def _call_load_ipython_extension(self, mod): > 133 if hasattr(mod, 'load_ipython_extension'): > --> 134 mod.load_ipython_extension(self.shell) > mod.load_ipython_extension = <function load_ipython_extension at > 0x7f67002d7040> > self.shell = <sage.repl.interpreter.SageTerminalInteractiveShell > object at 0x7f66feb5bac0> > 135 return True > 136 > 137 def _call_unload_ipython_extension(self, mod): > 138 if hasattr(mod, 'unload_ipython_extension'): > 139 mod.unload_ipython_extension(self.shell) > 140 return True > 141 > 142 @undoc > 143 def install_extension(self, url, filename=None): > 144 """ > 145 Deprecated. > 146 """ > 147 # Ensure the extension directory exists > 148 raise DeprecationWarning( > 149 '`install_extension` and the `install_ext` magic have > been deprecated since IPython 4.0' > > /usr/lib/python3/dist-packages/sage/__init__.py in > load_ipython_extension(*args=(<sage.repl.interpreter.SageTerminalInteractiveShell > object>,)) > 1 __all__ = ['all'] > 2 > 3 # Set sage.__version__ to the current version number. This is > analogous > 4 # to many other Python packages. > 5 from sage.version import version as __version__ > 6 > 7 # Make sure that the correct zlib library is loaded. This is needed > 8 # to prevent the system zlib to be loaded instead of the Sage one. > 9 # See https://trac.sagemath.org/ticket/23122 > 10 import zlib > 11 > 12 # IPython calls this when starting up > 13 def load_ipython_extension(*args): > 14 import sage.repl.ipython_extension > ---> 15 sage.repl.ipython_extension.load_ipython_extension(*args) > sage.repl.ipython_extension.load_ipython_extension = <function > load_ipython_extension at 0x7f66fcacaa60> > args = (<sage.repl.interpreter.SageTerminalInteractiveShell object at > 0x7f66feb5bac0>,) > 16 > 17 > 18 # Monkey-patch inspect.isfunction() to support Cython functions. > 19 def isfunction(obj): > 20 """ > 21 Check whether something is a function. > 22 > 23 We assume that anything which has a genuine ``__code__`` > 24 attribute (not using ``__getattr__`` overrides) is a function. > 25 This is meant to support Cython functions. > 26 > 27 EXAMPLES:: > 28 > 29 sage: from inspect import isfunction > 30 sage: def f(): pass > 31 sage: isfunction(f) > > /usr/lib/python3/dist-packages/sage/repl/ipython_extension.py in > wrapper(*args=(<sage.repl.interpreter.SageTerminalInteractiveShell object>,), > **kwargs={}) > 547 ....: if work: > 548 ....: return 'foo worked' > 549 ....: raise RuntimeError("foo didn't work") > 550 sage: foo(False) > 551 Traceback (most recent call last): > 552 ... > 553 RuntimeError: foo didn't work > 554 sage: foo(True) > 555 'foo worked' > 556 sage: foo(False) > 557 sage: foo(True) > 558 """ > 559 @wraps(func) > 560 def wrapper(*args, **kwargs): > 561 if not wrapper.has_run: > --> 562 result = func(*args, **kwargs) > result = undefined > global func = undefined > args = (<sage.repl.interpreter.SageTerminalInteractiveShell object at > 0x7f66feb5bac0>,) > kwargs = {} > 563 wrapper.has_run = True > 564 return result > 565 wrapper.has_run = False > 566 return wrapper > 567 > 568 > 569 @run_once > 570 def load_ipython_extension(ip): > 571 """ > 572 Load the extension in IPython. > 573 """ > 574 # this modifies ip > 575 SageCustomizations(shell=ip) > > /usr/lib/python3/dist-packages/sage/repl/ipython_extension.py in > load_ipython_extension(ip=<sage.repl.interpreter.SageTerminalInteractiveShell > object>) > 560 def wrapper(*args, **kwargs): > 561 if not wrapper.has_run: > 562 result = func(*args, **kwargs) > 563 wrapper.has_run = True > 564 return result > 565 wrapper.has_run = False > 566 return wrapper > 567 > 568 > 569 @run_once > 570 def load_ipython_extension(ip): > 571 """ > 572 Load the extension in IPython. > 573 """ > 574 # this modifies ip > --> 575 SageCustomizations(shell=ip) > global SageCustomizations = <class > 'sage.repl.ipython_extension.SageCustomizations'> > global shell = undefined > ip = <sage.repl.interpreter.SageTerminalInteractiveShell object at > 0x7f66feb5bac0> > > /usr/lib/python3/dist-packages/sage/repl/ipython_extension.py in > __init__(self=<sage.repl.ipython_extension.SageCustomizations object>, > shell=<sage.repl.interpreter.SageTerminalInteractiveShell object>) > 420 def __init__(self, shell=None): > 421 """ > 422 Initialize the Sage plugin. > 423 """ > 424 self.shell = shell > 425 > 426 self.auto_magics = SageMagics(shell) > 427 self.shell.register_magics(self.auto_magics) > 428 > 429 import sage.misc.edit_module as edit_module > 430 self.shell.set_hook('editor', edit_module.edit_devel) > 431 > 432 self.init_inspector() > 433 self.init_line_transforms() > 434 > --> 435 import sage.all # until sage's import hell is fixed > sage.all = undefined > 436 > 437 self.shell.verbose_quit = True > 438 self.set_quit_hook() > 439 > 440 self.register_interface_magics() > 441 > 442 if SAGE_IMPORTALL == 'yes': > 443 self.init_environment() > 444 > 445 def register_interface_magics(self): > 446 """ > 447 Register magics for each of the Sage interfaces > 448 """ > 449 from sage.repl.interface_magic import InterfaceMagic > 450 InterfaceMagic.register_all(self.shell) > > /usr/lib/python3/dist-packages/sage/all.py in <module> > 91 warnings.filterwarnings('ignore', category=RuntimeWarning, > 92 message=r"'sin' and 'sout' swap memory stats couldn't be > determined") > 93 from sage.misc.all import * # takes a while > 94 from sage.typeset.all import * > 95 from sage.repl.all import * > 96 > 97 from sage.misc.sh import sh > 98 > 99 from sage.libs.all import * > 100 from sage.data_structures.all import * > 101 from sage.doctest.all import * > 102 > 103 from sage.structure.all import * > 104 from sage.rings.all import * > 105 from sage.arith.all import * > --> 106 from sage.matrix.all import * > global sage.matrix.all = undefined > 107 > 108 from sage.symbolic.all import * > 109 from sage.modules.all import * > 110 from sage.monoids.all import * > 111 from sage.algebras.all import * > 112 from sage.modular.all import * > 113 from sage.sat.all import * > 114 from sage.schemes.all import * > 115 from sage.graphs.all import * > 116 from sage.groups.all import * > 117 from sage.arith.power import generic_power as power > 118 from sage.databases.all import * > 119 from sage.categories.all import * > 120 from sage.sets.all import * > 121 from sage.probability.all import * > > /usr/lib/python3/dist-packages/sage/matrix/__init__.py in <module> > 1 # Resolve a cyclic import > ----> 2 import sage.matrix.args > global sage.matrix.args = undefined > > /usr/lib/python3/dist-packages/sage/matrix/args.pyx in init sage.matrix.args > (build/cythonized/sage/matrix/args.c:21273)() > 8 # Copyright (C) 2018 Jeroen Demeyer <j.deme...@ugent.be> > 9 # > 10 # This program is free software: you can redistribute it and/or modify > 11 # it under the terms of the GNU General Public License as published by > 12 # the Free Software Foundation, either version 2 of the License, or > 13 # (at your option) any later version. > 14 # http://www.gnu.org/licenses/ > 15 > #***************************************************************************** > 16 > 17 cimport cython > 18 from cpython.sequence cimport PySequence_Fast > 19 from cysignals.signals cimport sig_check > 20 from cypari2.gen cimport Gen > 21 from cypari2.types cimport typ, t_MAT, t_VEC, t_COL, t_VECSMALL, > t_LIST, t_STR, t_CLOSURE > 22 > ---> 23 from .matrix_space import MatrixSpace > global matrix_space = undefined > global MatrixSpace = undefined > 24 from sage.rings.all import ZZ, RDF, CDF > 25 from sage.structure.coerce cimport (coercion_model, > 26 is_numpy_type, py_scalar_parent) > 27 from sage.structure.element cimport Element, RingElement, Vector > 28 from sage.arith.long cimport pyobject_to_long > 29 from sage.misc.misc_c import sized_iter > 30 from sage.categories import monoids > 31 > 32 > 33 CommutativeMonoids = monoids.Monoids().Commutative() > 34 > 35 > 36 cdef inline bint element_is_scalar(Element x): > 37 """ > 38 Should this element be considered a scalar (as opposed to a > vector)? > > /usr/lib/python3/dist-packages/sage/matrix/matrix_space.py in <module> > 31 # (at your option) any later version. > 32 # https://www.gnu.org/licenses/ > 33 # > **************************************************************************** > 34 from __future__ import print_function, absolute_import > 35 from six.moves import range > 36 from six import iteritems, integer_types > 37 > 38 # System imports > 39 import sys > 40 import operator > 41 > 42 # Sage matrix imports > 43 from . import matrix_generic_dense > 44 from . import matrix_generic_sparse > 45 > ---> 46 from . import matrix_modn_sparse > global matrix_modn_sparse = undefined > 47 > 48 from . import matrix_mod2_dense > 49 from . import matrix_gf2e_dense > 50 > 51 from . import matrix_integer_dense > 52 from . import matrix_integer_sparse > 53 > 54 from . import matrix_rational_dense > 55 from . import matrix_rational_sparse > 56 > 57 from . import matrix_polynomial_dense > 58 from . import matrix_mpolynomial_dense > 59 > 60 # Sage imports > 61 from sage.misc.superseded import deprecation > > ImportError: > /usr/lib/python3/dist-packages/sage/matrix/matrix_modn_sparse.cpython-38-x86_64-linux-gnu.so: > undefined symbol: > _ZNK6Givaro7IntegercvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEB5cxx11Ev > > *************************************************************************** > > History of session input: > *** Last line of input (may not be in above history): > > Best, > Lance > > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-support+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/CAPEqHYnogPuc6SeExsyA7oXt54UcKYPECSp1N0u%3Dqpq-jn69JQ%40mail.gmail.com. -- You received this message because you are subscribed to the Google Groups "sage-support" group. 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