I believe the following line in the output of the nm command you
suggested is the corresponding symbol?
0000000000017da0 T Givaro::Integer::operator
std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >() const
I've also attached the full output of the nm command as a txt file below in
case it's helpful!
On Wed, Mar 24, 2021 at 5:41 AM Dima Pasechnik <dimp...@gmail.com> wrote:
> On Tue, Mar 23, 2021 at 10:27 PM Mike Lee <symle...@gmail.com> wrote:
> >
> > Hi,
> >
> > I'm facing a similar issue when I tried to install Sage through conda (I
> followed the 'Setting Up' directions in https://wiki.sagemath.org/Conda).
> I get the following error in my Sage_crash_report.txt (attached)
> >
> > 'ImportError:
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/
> matrix_modn_sparse.cpython-39-x86_64-linux-gnu.so: undefined symbol:
> _ZNK6Givaro7IntegercvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEB5cxx11Ev'
>
> this is, demangled:
>
> $ c++filt
> _ZNK6Givaro7IntegercvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEB5cxx11Ev
> Givaro::Integer::operator std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >[abi:cxx11]() const
>
> Can you find this in the output of
>
> $ nm -D --demangle
> /home/msl/software/miniconda3/envs/sage/lib/libgivaro.so.9
>
> Perhaps, wrong C++ standard version chosen somewhere?
>
> Maybe Isuru knows what's wrong there.
>
> >
> > What could I do to fix this issue? Thank you in advance for the help!
> >
> > By the way, when I run 'ldd
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/
> matrix_modn_sparse.cpython-39-x86_64-linux-gnu.so ' I get the following
> output:
> >
> > linux-vdso.so.1 (0x00007ffde17a7000)
> > liblinbox.so.0 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../liblinbox.so.0
> (0x00007fa325ba0000)
> > libfflas.so.1 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libfflas.so.1
> (0x00007fa325ad4000)
> > libblas.so.3 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libblas.so.3
> (0x00007fa323ae3000)
> > libgivaro.so.9 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libgivaro.so.9
> (0x00007fa323a88000)
> > libflint.so.14 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libflint.so.14
> (0x00007fa32320d000)
> > libntl.so.43 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libntl.so.43
> (0x00007fa322fca000)
> > libgmp.so.10 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libgmp.so.10
> (0x00007fa322f24000)
> > libstdc++.so.6 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libstdc++.so.6
> (0x00007fa322daf000)
> > libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fa3229fb000)
> > libgcc_s.so.1 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libgcc_s.so.1
> (0x00007fa3229e7000)
> > libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fa3225f6000)
> > libffpack.so.1 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libffpack.so.1
> (0x00007fa3224e3000)
> > libgmpxx.so.4 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libgmpxx.so.4
> (0x00007fa3224da000)
> > libmpfr.so.6 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libmpfr.so.6
> (0x00007fa32245b000)
> > libiml.so.0 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libiml.so.0
> (0x00007fa322436000)
> > libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0
> (0x00007fa322217000)
> > libgfortran.so.5 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libgfortran.so.5
> (0x00007fa322075000)
> > /lib64/ld-linux-x86-64.so.2 (0x00007fa325aa8000)
> > libgf2x.so.3 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libgf2x.so.3
> (0x00007fa322062000)
> > libquadmath.so.0 =>
> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libquadmath.so.0
> (0x00007fa322028000)
> >
> > Mike
> >
> > On Sunday, January 24, 2021 at 1:16:24 PM UTC-5 dim...@gmail.com wrote:
> >>
> >> at the bottom of the log you see
> >>
> >> ImportError:
> /home/mathieu/opt/SageMath/local/lib/python3.8/site-packages/sage/matrix/
> matrix_modn_sparse.cpython-38-x86_64-linux-gnu.so:
> >> undefined symbol:
> >>
> _ZNK6Givaro7IntegercvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEB5cxx11Ev
> >>
> >>
> >> which is an indication that something went wrong with linking givaro.
> >> E.g. you might be linking to a system-wide
> >> installed givaro, but it's expected to be the one built by Sage -
> >> whether the latter is the case can be found out in the top-level
> >> config.log.
> >>
> >> What is the output of
> >>
> >> ldd
> /home/mathieu/opt/SageMath/local/lib/python3.8/site-packages/sage/matrix/
> matrix_modn_sparse.cpython-38-x86_64-linux-gnu.so
> >>
> >> ?
> >>
> >>
> >> On Sun, Jan 24, 2021 at 4:22 PM Mathieu Dutour <mathieu...@gmail.com>
> wrote:
> >> >
> >> >
> >> > --
> >> > You received this message because you are subscribed to the Google
> Groups "sage-support" group.
> >> > To unsubscribe from this group and stop receiving emails from it,
> send an email to sage-support...@googlegroups.com.
> >> > To view this discussion on the web visit
> https://groups.google.com/d/msgid/sage-support/CADm_teOrk03gf8bzyUxtvt9m16wEAP3%2BOsfkzxbjSjz4VN9bKw%40mail.gmail.com
> .
> >
> > --
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> > To unsubscribe from this group and stop receiving emails from it, send
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> > To view this discussion on the web visit
> https://groups.google.com/d/msgid/sage-support/3af54436-2cb1-4a8f-ac5e-ef109602fa0en%40googlegroups.com
> .
>
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;; This buffer is for text that is not saved, and for Lisp evaluation.
;; To create a file, visit it with C-x C-f and enter text in its buffer.
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0000000000014160 T Givaro::absCompare(Givaro::Integer const&, float)
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000000000001fee0 T Givaro::GivaroMain::DisplayVersion(std::ostream&)
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00000000000200f0 T Givaro::GivaroMain::Init()
000000000001fed0 T Givaro::GivaroMain::Version()
0000000000016f20 T Givaro::naturallog(Givaro::Integer const&)
0000000000020220 T Givaro::ObjectInit::ObjectInit()
0000000000020220 T Givaro::ObjectInit::ObjectInit()
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0000000000020190 T Givaro::ObjectInit::~ObjectInit()
0000000000020190 T Givaro::ObjectInit::~ObjectInit()
0000000000020110 T Givaro::GivaroAppli::run(int, char**)
0000000000050020 D Givaro::IntPrimeDom::IP
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00000000000148d0 T Givaro::Integer::operator>=(unsigned long) const
0000000000014810 T Givaro::Integer::operator>=(Givaro::Integer const&) const
0000000000014470 T Givaro::Integer::operator>(double) const
0000000000014490 T Givaro::Integer::operator>(float) const
00000000000144b0 T Givaro::Integer::operator>(int) const
00000000000144d0 T Givaro::Integer::operator>(unsigned int) const
00000000000144f0 T Givaro::Integer::operator>(long) const
0000000000014560 T Givaro::Integer::operator>(unsigned long) const
0000000000014450 T Givaro::Integer::operator>(Givaro::Integer const&) const
0000000000017d70 T Givaro::Integer::operator[](unsigned long) const
0000000000014910 T Givaro::Integer::operator<=(double) const
0000000000014940 T Givaro::Integer::operator<=(float) const
00000000000149d0 T Givaro::Integer::operator<=(int) const
0000000000014970 T Givaro::Integer::operator<=(unsigned int) const
0000000000014a00 T Givaro::Integer::operator<=(long) const
00000000000149a0 T Givaro::Integer::operator<=(unsigned long) const
00000000000148f0 T Givaro::Integer::operator<=(Givaro::Integer const&) const
00000000000171a0 T Givaro::Integer::operator<<(int) const
00000000000171f0 T Givaro::Integer::operator<<(unsigned int) const
0000000000017240 T Givaro::Integer::operator<<(long) const
0000000000017160 T Givaro::Integer::operator<<(unsigned long) const
00000000000145f0 T Givaro::Integer::operator<(double) const
0000000000014620 T Givaro::Integer::operator<(float) const
0000000000014700 T Givaro::Integer::operator<(int) const
0000000000014650 T Givaro::Integer::operator<(unsigned int) const
0000000000014730 T Givaro::Integer::operator<(long) const
0000000000014680 T Givaro::Integer::operator<(unsigned long) const
00000000000145d0 T Givaro::Integer::operator<(Givaro::Integer const&) const
0000000000013e70 T Givaro::Integer::operator-(long) const
0000000000013da0 T Givaro::Integer::operator-(unsigned long) const
0000000000013cd0 T Givaro::Integer::operator-(Givaro::Integer const&) const
0000000000015ea0 T Givaro::Integer::operator*(long) const
0000000000015df0 T Givaro::Integer::operator*(unsigned long) const
0000000000015d30 T Givaro::Integer::operator*(Givaro::Integer const&) const
00000000000141f0 T Givaro::Integer::operator!=(double) const
0000000000014210 T Givaro::Integer::operator!=(float) const
0000000000014230 T Givaro::Integer::operator!=(int) const
0000000000014250 T Givaro::Integer::operator!=(unsigned int) const
0000000000014270 T Givaro::Integer::operator!=(long) const
0000000000014290 T Givaro::Integer::operator!=(unsigned long) const
00000000000141d0 T Givaro::Integer::operator!=(Givaro::Integer const&) const
00000000000169b0 T Givaro::Integer::operator-() const
0000000000017a50 T Givaro::Integer::operator|(unsigned int const&) const
0000000000017800 T Givaro::Integer::operator|(unsigned long const&) const
0000000000017580 T Givaro::Integer::operator|(Givaro::Integer const&) const
00000000000168d0 T Givaro::Integer::operator+(long) const
0000000000016810 T Givaro::Integer::operator+(unsigned long) const
0000000000016740 T Givaro::Integer::operator+(Givaro::Integer const&) const
0000000000013280 T Givaro::Integer::operator%(double) const
0000000000013270 T Givaro::Integer::operator%(long) const
0000000000013220 T Givaro::Integer::operator%(unsigned long) const
0000000000013170 T Givaro::Integer::operator%(Givaro::Integer const&) const
00000000000172c0 T Givaro::Integer::operator>>(int) const
0000000000017350 T Givaro::Integer::operator>>(unsigned int) const
0000000000017310 T Givaro::Integer::operator>>(long) const
0000000000017280 T Givaro::Integer::operator>>(unsigned long) const
000000000001fe40 T Givaro::GivError::print(std::ostream&) const
000000000001ccc0 T Givaro::Rational::print(std::ostream&) const
000000000001d9a0 T Givaro::Rational::operator/(Givaro::Rational const&) const
000000000001e880 T Givaro::Rational::operator-(Givaro::Rational const&) const
000000000001d360 T Givaro::Rational::operator*(Givaro::Rational const&) const
000000000001f010 T Givaro::Rational::operator-() const
000000000001e150 T Givaro::Rational::operator+(Givaro::Rational const&) const
000000000001e090 T Givaro::Rational::operator%(Givaro::Integer const&) const
0000000000020640 T Givaro::BaseTimer::print(std::ostream&) const
00000000000206b0 T Givaro::BaseTimer::operator/(double) const
0000000000020670 T Givaro::BaseTimer::operator-(Givaro::BaseTimer const&) const
00000000000206a0 T Givaro::BaseTimer::operator+(Givaro::BaseTimer const&) const
000000000001a290 T Givaro::FermatDom::pepin(long) const
000000000001a150 T Givaro::FermatDom::fermat(Givaro::Integer&, long) const
000000000001b940 T Givaro::GivMMInfo::print(std::ostream&) const
00000000000201e0 T Givaro::InitAfter::operator<(Givaro::InitAfter const&) const
U std::ctype<char>::_M_widen_init() const
U std::istream::get(char&)
U std::istream::putback(char)
U std::ostream::put(char)
U std::ostream::flush()
U std::ostream& std::ostream::_M_insert<double>(double)
U std::ostream& std::ostream::_M_insert<unsigned
long>(unsigned long)
U std::locale::locale()
U std::locale::~locale()
0000000000018050 W std::__cxx11::_List_base<Givaro::Integer,
std::allocator<Givaro::Integer> >::_M_clear()
U std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*,
unsigned long)
000000000001c880 W void std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> >::_M_construct<char const*>(char
const*, char const*, std::forward_iterator_tag)
U std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&)
U std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >::_M_create(unsigned long&, unsigned long)
U std::__cxx11::basic_stringbuf<char, std::char_traits<char>,
std::allocator<char> >::_M_sync(char*, unsigned long, unsigned long)
U std::__cxx11::basic_istringstream<char,
std::char_traits<char>, std::allocator<char> >::~basic_istringstream()
U std::__cxx11::basic_ostringstream<char,
std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()
U
std::__detail::_List_node_base::_M_hook(std::__detail::_List_node_base*)
U std::__detail::_List_node_base::_M_unhook()
U std::ios_base::Init::Init()
U std::ios_base::Init::~Init()
U std::ios_base::ios_base()
U std::ios_base::~ios_base()
U std::basic_ios<char, std::char_traits<char>
>::init(std::basic_streambuf<char, std::char_traits<char> >*)
U std::basic_ios<char, std::char_traits<char>
>::clear(std::_Ios_Iostate)
U operator new(unsigned long)
U operator>>(std::istream&, __mpz_struct*)
U std::basic_ostream<char, std::char_traits<char> >&
std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char,
std::char_traits<char> >&, char const*, long)
U std::__throw_bad_cast()
U std::__throw_logic_error(char const*)
U std::cerr
U std::cout
U std::basic_ostream<char, std::char_traits<char> >&
std::endl<char, std::char_traits<char> >(std::basic_ostream<char,
std::char_traits<char> >&)
U std::basic_istream<char, std::char_traits<char> >&
std::operator>><char, std::char_traits<char>, std::allocator<char>
>(std::basic_istream<char, std::char_traits<char> >&,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
>&)
000000000004f2b0 V typeinfo for Givaro::ObjectInit
000000000004f1e0 V typeinfo for Givaro::GivBadFormat
000000000004f1c8 V typeinfo for Givaro::GivMathError
000000000004f1f8 V typeinfo for Givaro::GivMathDivZero
000000000004f1b8 V typeinfo for Givaro::GivError
00000000000236c0 V typeinfo name for Givaro::ObjectInit
0000000000023460 V typeinfo name for Givaro::GivBadFormat
0000000000023440 V typeinfo name for Givaro::GivMathError
0000000000023480 V typeinfo name for Givaro::GivMathDivZero
0000000000023420 V typeinfo name for Givaro::GivError
U VTT for std::__cxx11::basic_istringstream<char,
std::char_traits<char>, std::allocator<char> >
U VTT for std::__cxx11::basic_ostringstream<char,
std::char_traits<char>, std::allocator<char> >
U vtable for __cxxabiv1::__class_type_info
U vtable for __cxxabiv1::__si_class_type_info
000000000004f2c0 V vtable for Givaro::ObjectInit
000000000004f260 V vtable for Givaro::GivBadFormat
000000000004f238 V vtable for Givaro::GivMathError
000000000004f288 V vtable for Givaro::GivMathDivZero
000000000004f210 V vtable for Givaro::GivError
U vtable for std::__cxx11::basic_stringbuf<char,
std::char_traits<char>, std::allocator<char> >
U vtable for std::__cxx11::basic_istringstream<char,
std::char_traits<char>, std::allocator<char> >
U vtable for std::__cxx11::basic_ostringstream<char,
std::char_traits<char>, std::allocator<char> >
U vtable for std::basic_streambuf<char, std::char_traits<char>
>
U vtable for std::basic_ios<char, std::char_traits<char> >
