Mike, Can you try creating a new conda environment? This is an issue with the latest givaro build we had and we marked it as broken. Details at https://github.com/conda-forge/givaro-feedstock/issues/13
(You could also try doing `conda install "givaro=4.1.1=h192cbe9_1"` to get the older link.) Isuru On Wed, Mar 24, 2021 at 9:07 AM Mike Lee <symle...@gmail.com> wrote: > Not sure if this is relevant, but I get the following messages when I try > running 'conda update givaro' in my sage conda environment (attached). I > apologize for multiple messages! > > On Wed, Mar 24, 2021 at 8:42 AM Mike Lee <symle...@gmail.com> wrote: > >> I believe the following line in the output of the nm command you >> suggested is the corresponding symbol? >> >> 0000000000017da0 T Givaro::Integer::operator >> std::__cxx11::basic_string<char, std::char_traits<char>, >> std::allocator<char> >() const >> >> I've also attached the full output of the nm command as a txt file below >> in case it's helpful! >> >> On Wed, Mar 24, 2021 at 5:41 AM Dima Pasechnik <dimp...@gmail.com> wrote: >> >>> On Tue, Mar 23, 2021 at 10:27 PM Mike Lee <symle...@gmail.com> wrote: >>> > >>> > Hi, >>> > >>> > I'm facing a similar issue when I tried to install Sage through conda >>> (I followed the 'Setting Up' directions in >>> https://wiki.sagemath.org/Conda). I get the following error in my >>> Sage_crash_report.txt (attached) >>> > >>> > 'ImportError: >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/ >>> matrix_modn_sparse.cpython-39-x86_64-linux-gnu.so: undefined symbol: >>> _ZNK6Givaro7IntegercvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEB5cxx11Ev' >>> >>> this is, demangled: >>> >>> $ c++filt >>> _ZNK6Givaro7IntegercvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEB5cxx11Ev >>> Givaro::Integer::operator std::__cxx11::basic_string<char, >>> std::char_traits<char>, std::allocator<char> >[abi:cxx11]() const >>> >>> Can you find this in the output of >>> >>> $ nm -D --demangle >>> /home/msl/software/miniconda3/envs/sage/lib/libgivaro.so.9 >>> >>> Perhaps, wrong C++ standard version chosen somewhere? >>> >>> Maybe Isuru knows what's wrong there. >>> >>> > >>> > What could I do to fix this issue? Thank you in advance for the help! >>> > >>> > By the way, when I run 'ldd >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/ >>> matrix_modn_sparse.cpython-39-x86_64-linux-gnu.so ' I get the following >>> output: >>> > >>> > linux-vdso.so.1 (0x00007ffde17a7000) >>> > liblinbox.so.0 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../liblinbox.so.0 >>> (0x00007fa325ba0000) >>> > libfflas.so.1 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libfflas.so.1 >>> (0x00007fa325ad4000) >>> > libblas.so.3 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libblas.so.3 >>> (0x00007fa323ae3000) >>> > libgivaro.so.9 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libgivaro.so.9 >>> (0x00007fa323a88000) >>> > libflint.so.14 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libflint.so.14 >>> (0x00007fa32320d000) >>> > libntl.so.43 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libntl.so.43 >>> (0x00007fa322fca000) >>> > libgmp.so.10 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libgmp.so.10 >>> (0x00007fa322f24000) >>> > libstdc++.so.6 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libstdc++.so.6 >>> (0x00007fa322daf000) >>> > libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fa3229fb000) >>> > libgcc_s.so.1 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../../libgcc_s.so.1 >>> (0x00007fa3229e7000) >>> > libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fa3225f6000) >>> > libffpack.so.1 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libffpack.so.1 >>> (0x00007fa3224e3000) >>> > libgmpxx.so.4 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libgmpxx.so.4 >>> (0x00007fa3224da000) >>> > libmpfr.so.6 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libmpfr.so.6 >>> (0x00007fa32245b000) >>> > libiml.so.0 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libiml.so.0 >>> (0x00007fa322436000) >>> > libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 >>> (0x00007fa322217000) >>> > libgfortran.so.5 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libgfortran.so.5 >>> (0x00007fa322075000) >>> > /lib64/ld-linux-x86-64.so.2 (0x00007fa325aa8000) >>> > libgf2x.so.3 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libgf2x.so.3 >>> (0x00007fa322062000) >>> > libquadmath.so.0 => >>> /home/msl/software/miniconda3/envs/sage/lib/python3.9/site-packages/sage/matrix/../../../.././libquadmath.so.0 >>> (0x00007fa322028000) >>> > >>> > Mike >>> > >>> > On Sunday, January 24, 2021 at 1:16:24 PM UTC-5 dim...@gmail.com >>> wrote: >>> >> >>> >> at the bottom of the log you see >>> >> >>> >> ImportError: >>> /home/mathieu/opt/SageMath/local/lib/python3.8/site-packages/sage/matrix/ >>> matrix_modn_sparse.cpython-38-x86_64-linux-gnu.so: >>> >> undefined symbol: >>> >> >>> _ZNK6Givaro7IntegercvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEB5cxx11Ev >>> >> >>> >> >>> >> which is an indication that something went wrong with linking givaro. >>> >> E.g. you might be linking to a system-wide >>> >> installed givaro, but it's expected to be the one built by Sage - >>> >> whether the latter is the case can be found out in the top-level >>> >> config.log. >>> >> >>> >> What is the output of >>> >> >>> >> ldd >>> /home/mathieu/opt/SageMath/local/lib/python3.8/site-packages/sage/matrix/ >>> matrix_modn_sparse.cpython-38-x86_64-linux-gnu.so >>> >> >>> >> ? >>> >> >>> >> >>> >> On Sun, Jan 24, 2021 at 4:22 PM Mathieu Dutour <mathieu...@gmail.com> >>> wrote: >>> >> > >>> >> > >>> >> > -- >>> >> > You received this message because you are subscribed to the Google >>> Groups "sage-support" group. >>> >> > To unsubscribe from this group and stop receiving emails from it, >>> send an email to sage-support...@googlegroups.com. >>> >> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-support/CADm_teOrk03gf8bzyUxtvt9m16wEAP3%2BOsfkzxbjSjz4VN9bKw%40mail.gmail.com >>> . >>> > >>> > -- >>> > You received this message because you are subscribed to the Google >>> Groups "sage-support" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-support+unsubscr...@googlegroups.com. >>> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-support/3af54436-2cb1-4a8f-ac5e-ef109602fa0en%40googlegroups.com >>> . >>> >>> -- >>> You received this message because you are subscribed to a topic in the >>> Google Groups "sage-support" group. >>> To unsubscribe from this topic, visit >>> https://groups.google.com/d/topic/sage-support/uLLCi94RQAU/unsubscribe. >>> To unsubscribe from this group and all its topics, send an email to >>> sage-support+unsubscr...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-support/CAAWYfq1nH_hnH3kv7iAGoUtuv_Tm1keTSh-KLhVagz64AzDgFQ%40mail.gmail.com >>> . >>> >> -- You received this message because you are subscribed to the Google Groups "sage-support" group. 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