On Wed, 25 Mar 2020, 14:19 Kashif Bari, <kashb...@gmail.com> wrote: > I do not believe I I have permissions to build on a disk physically in the > machine being used. >
you may ask for, at least, explaining that you have a problem with skew timestamps. The scratch folder is where I was told to install any software that I wish > to use. The home directory that I have is not large enough to install > anything. > > On Tue, Mar 24, 2020 at 8:43 PM Dima Pasechnik <dimp...@gmail.com> wrote: > >> >> >> On Wed, 25 Mar 2020, 02:21 Kashif Bari, <kashb...@gmail.com> wrote: >> >>> Hi Dima, >>> >>> I am building locally, as this is a university cluster and I only have >>> access to my local directories. >>> >> >> by "local" I mean the filesystem on a disk physically in the machine you >> are using, >> as opposed to a networked file system, often used on HPC clusters. >> >> HPC clusters usually give users space for their home directories on >> networked file systems, and for "scratch" partitions too. >> >> >>> Unfortunately, this did not resolve the issue and this line was added to >>> my output: >>> >>> [sqlite-3270100] configure: WARNING: unrecognized options: >>> --disable-maintainer-mode >>> >>> In the log file, it still has this as the last error: >>> >>> configure: error: in >>> `/scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/sqlite-3270100/src': >>> configure: error: C compiler cannot create executables >>> >>> Best, >>> Kash >>> >>> On Tue, Mar 24, 2020 at 7:53 AM Dima Pasechnik <dimp...@gmail.com> >>> wrote: >>> >>>> On Tue, Mar 24, 2020 at 4:51 PM Kashif Bari <kashb...@gmail.com> wrote: >>>> > >>>> > I believe I was able to resolve the issue with mpc-1.1.0 by loading a >>>> more recent version of the texinfo package! Hopefully others who have this >>>> issue will be able to resolve it similarly. >>>> > >>>> > However, I ended up running into this issue when running make again: >>>> > >>>> > Error building Sage. >>>> > >>>> > The following package(s) may have failed to build (not necessarily >>>> > during this run of 'make all-start'): >>>> > >>>> > * package: sqlite-3270100 >>>> > log file: /scratch/user/kbari/sage-8.9/logs/pkgs/sqlite-3270100.log >>>> > build directory: >>>> /scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/sqlite-3270100 >>>> > >>>> > The build directory may contain configuration files and other >>>> potentially >>>> > helpful information. WARNING: if you now run 'make' again, the build >>>> > directory will, by default, be deleted. Set the environment variable >>>> > SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. >>>> > >>>> > make: *** [all-start] Error 1 >>>> > >>>> >>>> this is a familiar problem, due to skew clocks on your system, I >>>> suppose. >>>> Is /scratch/ a local filesystem? If not, you'd better try building on >>>> a local filesystem. >>>> (the problem is that sq >>>> In the upcoming release one should be able to use sqlite from the >>>> system, >>>> thanks to https://trac.sagemath.org/ticket/29002 >>>> >>>> One way around this should be to change the line >>>> >>>> sdh_configure >>>> >>>> near the bottom of build/pkgs/sqlite/spkg-install >>>> >>>> to be >>>> >>>> sdh_configure --disable-maintainer-mode >>>> >>>> and try again running make again. >>>> >>>> (This change should make sqlite's ./configure less sensitive to skew >>>> clock) >>>> >>>> HTH, >>>> Dima >>>> >>>> >>>> >>>> > It seems CentOS doesn't like when I install Sage! Thank you all once >>>> again for all your helpful comments! >>>> > >>>> > On Wed, Mar 18, 2020 at 11:33 PM Dima Pasechnik <dimp...@gmail.com> >>>> wrote: >>>> >> >>>> >> On Thu, Mar 19, 2020 at 12:25 PM Kashif Bari <kashb...@gmail.com> >>>> wrote: >>>> >> > >>>> >> > Thank you, Dima, I was able to load the texinfo package before I >>>> did make and I believe this resolved my issue with mpfr. However, I ran >>>> into the same issue with mpc-1.1.0 now instead of mpfr. >>>> >> >>>> >> hmm, the same? If you have now makeinfo installed, it should be a >>>> >> different issue. >>>> >> >>>> >> > >>>> >> > I currently have sage 8.9 installed on my personal laptop, so I >>>> figured I would stick with the same version that I know my code runs on. >>>> >> > >>>> >> > On Wed, Mar 18, 2020 at 9:56 PM Dima Pasechnik <dimp...@gmail.com> >>>> wrote: >>>> >> >> >>>> >> >> mpfr needs makeinfo program to be installed. This is a pretty >>>> standard thing, >>>> >> >> which on Centos is in texinfo package >>>> >> >> >>>> https://centos.pkgs.org/7/centos-x86_64/texinfo-5.1-5.el7.x86_64.rpm.html >>>> >> >> >>>> >> >> >>>> >> >> By the way, why are you building Sage 8.9, and not 9.0? >>>> >> >> >>>> >> >> On Thu, Mar 19, 2020 at 7:00 AM Kashif Bari <kashb...@gmail.com> >>>> wrote: >>>> >> >> > >>>> >> >> > I am trying to install Sage version 8.9 on the High performance >>>> cluster at my university, which runs Linux (CentOS 7). I am installing to >>>> my local "scratch" folder since I do not have administrative permissions. I >>>> am trying to install from source code as the pre-built binaries are for >>>> Ubuntu and Debian and did not work for me and I was unsure if they would >>>> work on CentOS 7. I was able to run ./configure without any issues and then >>>> when i did make, I received the following log file (attached) and error: >>>> >> >> > >>>> >> >> > Error building Sage. >>>> >> >> > >>>> >> >> > The following package(s) may have failed to build (not >>>> necessarily >>>> >> >> > during this run of 'make all-start'): >>>> >> >> > >>>> >> >> > * package: mpfr-4.0.1.p0 >>>> >> >> > log file: >>>> /scratch/user/kbari/sage-8.9/logs/pkgs/mpfr-4.0.1.p0.log >>>> >> >> > build directory: >>>> /scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/mpfr-4.0.1.p0 >>>> >> >> > >>>> >> >> > The build directory may contain configuration files and other >>>> potentially >>>> >> >> > helpful information. WARNING: if you now run 'make' again, the >>>> build >>>> >> >> > directory will, by default, be deleted. Set the environment >>>> variable >>>> >> >> > SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. >>>> >> >> > >>>> >> >> > make[1]: *** [all-start] Error 1 >>>> >> >> > make[1]: Leaving directory `/scratch/user/kbari/sage-8.9' >>>> >> >> > make: *** [all] Error 2 >>>> >> >> > >>>> >> >> > >>>> >> >> > I have tried to contact the help and support for the cluster, >>>> but they do not know much about Sage. Any help would be greatly >>>> appreciated! Thank you for your time! >>>> >> >> > >>>> >> >> > -- >>>> >> >> > You received this message because you are subscribed to the >>>> Google Groups "sage-support" group. >>>> >> >> > To unsubscribe from this group and stop receiving emails from >>>> it, send an email to sage-support+unsubscr...@googlegroups.com. >>>> >> >> > To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/sage-support/9d94553b-f5b0-435b-93c5-7724c3422cc3%40googlegroups.com >>>> . >>>> >> >> >>>> >> >> -- >>>> >> >> You received this message because you are subscribed to the >>>> Google Groups "sage-support" group. >>>> >> >> To unsubscribe from this group and stop receiving emails from it, >>>> send an email to sage-support+unsubscr...@googlegroups.com. >>>> >> >> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/sage-support/CAAWYfq0p1Z5t8KZmWvPqdqstOS77eaLveTs5w8qsOXp6EwK67w%40mail.gmail.com >>>> . >>>> >> > >>>> >> > -- >>>> >> > You received this message because you are subscribed to the Google >>>> Groups "sage-support" group. >>>> >> > To unsubscribe from this group and stop receiving emails from it, >>>> send an email to sage-support+unsubscr...@googlegroups.com. >>>> >> > To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/sage-support/CAJoD6MJFKbvovOSj_zLpBohUPtaPFYP%3Dpx8XKza5Lhb%2ByAiqFA%40mail.gmail.com >>>> . >>>> >> >>>> >> -- >>>> >> You received this message because you are subscribed to the Google >>>> Groups "sage-support" group. >>>> >> To unsubscribe from this group and stop receiving emails from it, >>>> send an email to sage-support+unsubscr...@googlegroups.com. >>>> >> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/sage-support/CAAWYfq1iCUYRzukvrD95DKgg%3DtJhLoDHcDEmZiddwG%2BGADCDgg%40mail.gmail.com >>>> . >>>> > >>>> > -- >>>> > You received this message because you are subscribed to the Google >>>> Groups "sage-support" group. >>>> > To unsubscribe from this group and stop receiving emails from it, >>>> send an email to sage-support+unsubscr...@googlegroups.com. >>>> > To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/sage-support/CAJoD6M%2BXkyeCsj9wpgCfVXU52YMoOrLUMZ1Je4F7in4orW1iqw%40mail.gmail.com >>>> . >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "sage-support" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to sage-support+unsubscr...@googlegroups.com. >>>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/sage-support/CAAWYfq31HJwhzkzSwAVzG32d_ahfPARm%3DHja41ze%3D3yxC5F10w%40mail.gmail.com >>>> . >>>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "sage-support" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-support+unsubscr...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-support/CAJoD6MLgEfp_0WHwA2GpQykbMoij5UUi-nyeYvDwmbTfe6CJZg%40mail.gmail.com >>> <https://groups.google.com/d/msgid/sage-support/CAJoD6MLgEfp_0WHwA2GpQykbMoij5UUi-nyeYvDwmbTfe6CJZg%40mail.gmail.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-support" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to sage-support+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-support/CAAWYfq2svfW3SQDi%2BOUW%3DGF4eMjvQvOG5HU0fBb7Jh-5siGBgQ%40mail.gmail.com >> <https://groups.google.com/d/msgid/sage-support/CAAWYfq2svfW3SQDi%2BOUW%3DGF4eMjvQvOG5HU0fBb7Jh-5siGBgQ%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-support+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/CAJoD6MKLZtAd1bkA0qLKzcuLt5gQ11%3D7FYkUaUzB-JRGLMEZ6A%40mail.gmail.com > <https://groups.google.com/d/msgid/sage-support/CAJoD6MKLZtAd1bkA0qLKzcuLt5gQ11%3D7FYkUaUzB-JRGLMEZ6A%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-support" group. 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