On Wed, 25 Mar 2020, 02:21 Kashif Bari, <kashb...@gmail.com> wrote: > Hi Dima, > > I am building locally, as this is a university cluster and I only have > access to my local directories. >
by "local" I mean the filesystem on a disk physically in the machine you are using, as opposed to a networked file system, often used on HPC clusters. HPC clusters usually give users space for their home directories on networked file systems, and for "scratch" partitions too. > Unfortunately, this did not resolve the issue and this line was added to > my output: > > [sqlite-3270100] configure: WARNING: unrecognized options: > --disable-maintainer-mode > > In the log file, it still has this as the last error: > > configure: error: in > `/scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/sqlite-3270100/src': > configure: error: C compiler cannot create executables > > Best, > Kash > > On Tue, Mar 24, 2020 at 7:53 AM Dima Pasechnik <dimp...@gmail.com> wrote: > >> On Tue, Mar 24, 2020 at 4:51 PM Kashif Bari <kashb...@gmail.com> wrote: >> > >> > I believe I was able to resolve the issue with mpc-1.1.0 by loading a >> more recent version of the texinfo package! Hopefully others who have this >> issue will be able to resolve it similarly. >> > >> > However, I ended up running into this issue when running make again: >> > >> > Error building Sage. >> > >> > The following package(s) may have failed to build (not necessarily >> > during this run of 'make all-start'): >> > >> > * package: sqlite-3270100 >> > log file: /scratch/user/kbari/sage-8.9/logs/pkgs/sqlite-3270100.log >> > build directory: >> /scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/sqlite-3270100 >> > >> > The build directory may contain configuration files and other >> potentially >> > helpful information. WARNING: if you now run 'make' again, the build >> > directory will, by default, be deleted. Set the environment variable >> > SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. >> > >> > make: *** [all-start] Error 1 >> > >> >> this is a familiar problem, due to skew clocks on your system, I suppose. >> Is /scratch/ a local filesystem? If not, you'd better try building on >> a local filesystem. >> (the problem is that sq >> In the upcoming release one should be able to use sqlite from the system, >> thanks to https://trac.sagemath.org/ticket/29002 >> >> One way around this should be to change the line >> >> sdh_configure >> >> near the bottom of build/pkgs/sqlite/spkg-install >> >> to be >> >> sdh_configure --disable-maintainer-mode >> >> and try again running make again. >> >> (This change should make sqlite's ./configure less sensitive to skew >> clock) >> >> HTH, >> Dima >> >> >> >> > It seems CentOS doesn't like when I install Sage! Thank you all once >> again for all your helpful comments! >> > >> > On Wed, Mar 18, 2020 at 11:33 PM Dima Pasechnik <dimp...@gmail.com> >> wrote: >> >> >> >> On Thu, Mar 19, 2020 at 12:25 PM Kashif Bari <kashb...@gmail.com> >> wrote: >> >> > >> >> > Thank you, Dima, I was able to load the texinfo package before I did >> make and I believe this resolved my issue with mpfr. However, I ran into >> the same issue with mpc-1.1.0 now instead of mpfr. >> >> >> >> hmm, the same? If you have now makeinfo installed, it should be a >> >> different issue. >> >> >> >> > >> >> > I currently have sage 8.9 installed on my personal laptop, so I >> figured I would stick with the same version that I know my code runs on. >> >> > >> >> > On Wed, Mar 18, 2020 at 9:56 PM Dima Pasechnik <dimp...@gmail.com> >> wrote: >> >> >> >> >> >> mpfr needs makeinfo program to be installed. This is a pretty >> standard thing, >> >> >> which on Centos is in texinfo package >> >> >> >> https://centos.pkgs.org/7/centos-x86_64/texinfo-5.1-5.el7.x86_64.rpm.html >> >> >> >> >> >> >> >> >> By the way, why are you building Sage 8.9, and not 9.0? >> >> >> >> >> >> On Thu, Mar 19, 2020 at 7:00 AM Kashif Bari <kashb...@gmail.com> >> wrote: >> >> >> > >> >> >> > I am trying to install Sage version 8.9 on the High performance >> cluster at my university, which runs Linux (CentOS 7). I am installing to >> my local "scratch" folder since I do not have administrative permissions. I >> am trying to install from source code as the pre-built binaries are for >> Ubuntu and Debian and did not work for me and I was unsure if they would >> work on CentOS 7. I was able to run ./configure without any issues and then >> when i did make, I received the following log file (attached) and error: >> >> >> > >> >> >> > Error building Sage. >> >> >> > >> >> >> > The following package(s) may have failed to build (not necessarily >> >> >> > during this run of 'make all-start'): >> >> >> > >> >> >> > * package: mpfr-4.0.1.p0 >> >> >> > log file: >> /scratch/user/kbari/sage-8.9/logs/pkgs/mpfr-4.0.1.p0.log >> >> >> > build directory: >> /scratch/user/kbari/sage-8.9/local/var/tmp/sage/build/mpfr-4.0.1.p0 >> >> >> > >> >> >> > The build directory may contain configuration files and other >> potentially >> >> >> > helpful information. WARNING: if you now run 'make' again, the >> build >> >> >> > directory will, by default, be deleted. Set the environment >> variable >> >> >> > SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. >> >> >> > >> >> >> > make[1]: *** [all-start] Error 1 >> >> >> > make[1]: Leaving directory `/scratch/user/kbari/sage-8.9' >> >> >> > make: *** [all] Error 2 >> >> >> > >> >> >> > >> >> >> > I have tried to contact the help and support for the cluster, >> but they do not know much about Sage. Any help would be greatly >> appreciated! Thank you for your time! >> >> >> > >> >> >> > -- >> >> >> > You received this message because you are subscribed to the >> Google Groups "sage-support" group. >> >> >> > To unsubscribe from this group and stop receiving emails from it, >> send an email to sage-support+unsubscr...@googlegroups.com. >> >> >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-support/9d94553b-f5b0-435b-93c5-7724c3422cc3%40googlegroups.com >> . >> >> >> >> >> >> -- >> >> >> You received this message because you are subscribed to the Google >> Groups "sage-support" group. >> >> >> To unsubscribe from this group and stop receiving emails from it, >> send an email to sage-support+unsubscr...@googlegroups.com. >> >> >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-support/CAAWYfq0p1Z5t8KZmWvPqdqstOS77eaLveTs5w8qsOXp6EwK67w%40mail.gmail.com >> . >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> Groups "sage-support" group. >> >> > To unsubscribe from this group and stop receiving emails from it, >> send an email to sage-support+unsubscr...@googlegroups.com. >> >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-support/CAJoD6MJFKbvovOSj_zLpBohUPtaPFYP%3Dpx8XKza5Lhb%2ByAiqFA%40mail.gmail.com >> . >> >> >> >> -- >> >> You received this message because you are subscribed to the Google >> Groups "sage-support" group. >> >> To unsubscribe from this group and stop receiving emails from it, send >> an email to sage-support+unsubscr...@googlegroups.com. >> >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-support/CAAWYfq1iCUYRzukvrD95DKgg%3DtJhLoDHcDEmZiddwG%2BGADCDgg%40mail.gmail.com >> . >> > >> > -- >> > You received this message because you are subscribed to the Google >> Groups "sage-support" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> an email to sage-support+unsubscr...@googlegroups.com. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-support/CAJoD6M%2BXkyeCsj9wpgCfVXU52YMoOrLUMZ1Je4F7in4orW1iqw%40mail.gmail.com >> . >> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-support" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to sage-support+unsubscr...@googlegroups.com. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-support/CAAWYfq31HJwhzkzSwAVzG32d_ahfPARm%3DHja41ze%3D3yxC5F10w%40mail.gmail.com >> . >> > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-support+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/CAJoD6MLgEfp_0WHwA2GpQykbMoij5UUi-nyeYvDwmbTfe6CJZg%40mail.gmail.com > <https://groups.google.com/d/msgid/sage-support/CAJoD6MLgEfp_0WHwA2GpQykbMoij5UUi-nyeYvDwmbTfe6CJZg%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-support" group. 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