Dear All,
Yes, this is a problem peculiar to update-manager installs. (It does not
happen with command line installs). We are busy testing a fix and expect it
to be uploaded in a day or two.
In the meantime, a more generic fix for everyone is
sudo mv /home/`whoami`/.sage/tmp{.broken-permissions}
Regards,
Jan
On 14 November 2012 22:23, Kannappan Sampath <kntri...@gmail.com> wrote:
> Dear grshutt,
>
> Could you run the Sage with sudo permissions? Also, I had more or less the
> same problem, if your answer to the previous question is yes. I was
> suggested that I move .sage to .sage.backup and it worked like a charm.
>
> I think the following is a cleaner solution (quoting Jan's tip in the
> message thread I started):
>
> >Hi KnS,
>
> >Please stop sage, try this command
>
> >sudo mv /home/knsam/.sage/tmp{.broken-permissions}
>
> >And try run sage again.
>
> >Regards,
> >Jan
>
> Hope one of the solutions work for you...
>
>
> On Thu, Nov 15, 2012 at 1:42 AM, grshutt <grsh...@gmail.com> wrote:
>
>> I, too, have encountered two problems installing Sage 5.4.
>>
>> Here's the output from uname -a:
>>
>> Linux defoe 2.6.33.3.emp4 #1 SMP PREEMPT Tue Jun 22 08:56:49 EDT 2010
>> i686 i686 i386 GNU/Linux
>>
>> Distribution:
>>
>> Ubuntu 12.04 LTS
>>
>> 1. After installing Sage 5.4 via the Update Manager and starting the
>> application from the command line I received an error message ending:
>>
>> OSError: [Errno 13] Permission denied:
>> '/home/grshutt/.sage/tmp/defoe/7064'
>> Error importing ipy_profile_sage - perhaps you should run %upgrade?
>> WARNING: Loading of ipy_profile_sage failed.
>>
>> 2. Next, I compiled Sage 5.4 from source and received an error message
>> ending:
>>
>> Testing that Sage starts...
>> [2012-11-14 02:38:02] Sage version 5.4, released 2012-11-09
>> Yes, Sage starts.
>> spkg/pipestatus "./sage --docbuild --no-pdf-links all html 2>&1" "tee -a
>> dochtml.log"
>> Traceback (most recent call last):
>> File "/home/grshutt/sage-5.4/devel/sage/doc/common/builder.py", line
>> 12, in <module>
>> from sage.misc.misc import sage_makedirs as mkdir
>> File
>> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
>> line 141, in <module>
>> sage_makedirs(SAGE_TMP)
>> File
>> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
>> line 76, in sage_makedirs
>> os.makedirs(dir)
>> File "/home/grshutt/sage-5.4/local/lib/python/os.py", line 157, in
>> makedirs
>> mkdir(name, mode)
>> OSError: [Errno 13] Permission denied:
>> '/home/grshutt/.sage/tmp/defoe/31451'
>> Error in atexit._run_exitfuncs:
>> Traceback (most recent call last):
>> File "/home/grshutt/sage-5.4/local/lib/python/atexit.py", line 24, in
>> _run_exitfuncs
>> func(*targs, **kargs)
>> File
>> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/temporary_file.py",
>> line 48, in delete_tmpfiles
>> from sage.misc.misc import SAGE_TMP
>> File
>> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
>> line 141, in <module>
>> sage_makedirs(SAGE_TMP)
>> File
>> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
>> line 76, in sage_makedirs
>> os.makedirs(dir)
>> File "/home/grshutt/sage-5.4/local/lib/python/os.py", line 157, in
>> makedirs
>> mkdir(name, mode)
>> OSError: [Errno 13] Permission denied:
>> '/home/grshutt/.sage/tmp/defoe/31451'
>> Error in sys.exitfunc:
>> Traceback (most recent call last):
>> File "/home/grshutt/sage-5.4/local/lib/python/atexit.py", line 24, in
>> _run_exitfuncs
>> func(*targs, **kargs)
>> File
>> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/temporary_file.py",
>> line 48, in delete_tmpfiles
>> from sage.misc.misc import SAGE_TMP
>> File
>> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
>> line 141, in <module>
>> sage_makedirs(SAGE_TMP)
>> File
>> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
>> line 76, in sage_makedirs
>> os.makedirs(dir)
>> File "/home/grshutt/sage-5.4/local/lib/python/os.py", line 157, in
>> makedirs
>> mkdir(name, mode)
>> OSError: [Errno 13] Permission denied:
>> '/home/grshutt/.sage/tmp/defoe/31451'
>> make: *** [doc-html] Error 1
>>
>> Curious, I again started Sage from the command line and received the
>> following error message, which is similar to the message I received after
>> installing Sage from the Update Manager and starting the application from
>> the command line:
>>
>> ----------------------------------------------------------------------
>> | Sage Version 5.4, Release Date: 2012-11-09 |
>> | Type "notebook()" for the browser-based notebook interface. |
>> | Type "help()" for help. |
>> ----------------------------------------------------------------------
>> ERROR: An unexpected error occurred while tokenizing input
>> The following traceback may be corrupted or invalid
>> The error message is: ('EOF in multi-line statement', (179, 0))
>>
>>
>> ---------------------------------------------------------------------------
>> OSError Traceback (most recent call
>> last)
>>
>> /home/grshutt/sage-5.4/<string> in <module>()
>>
>> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/preparser_ipython.py
>> in <module>()
>> 6
>> ###########################################################################
>> 7
>> ----> 8 import sage.misc.interpreter
>> 9
>> 10 import preparser
>>
>> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/interpreter.py
>> in <module>()
>> 103
>> 104 import os
>> --> 105 import log
>> 106 import re
>> 107
>>
>> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/log.py
>> in <module>()
>> 64 import interpreter
>> 65 import latex
>> ---> 66 import misc
>> 67
>> 68 from sage.misc.viewer import browser, dvi_viewer
>>
>> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
>> in <module>()
>> 139
>> 140 SAGE_TMP = os.path.join(DOT_SAGE, 'tmp', HOSTNAME,
>> str(os.getpid()))
>> --> 141 sage_makedirs(SAGE_TMP)
>> 142
>> 143 SPYX_TMP = os.path.join(SAGE_TMP, 'spyx')
>>
>> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
>> in sage_makedirs(dir)
>> 74 """
>> 75 try:
>> ---> 76 os.makedirs(dir)
>> 77 except OSError:
>> 78 if not os.path.isdir(dir):
>>
>> /home/grshutt/sage-5.4/local/lib/python/os.pyc in makedirs(name, mode)
>> 155 if tail == curdir: # xxx/newdir/. exists if
>> xxx/newdir exists
>> 156 return
>> --> 157 mkdir(name, mode)
>> 158
>> 159 def removedirs(name):
>>
>> OSError: [Errno 13] Permission denied:
>> '/home/grshutt/.sage/tmp/defoe/7064'
>> WARNING: Failure executing code: 'import sage.misc.preparser_ipython;
>> sage.misc.preparser_ipython.magma_colon_equals=True'
>> ERROR: An unexpected error occurred while tokenizing input
>> The following traceback may be corrupted or invalid
>> The error message is: ('EOF in multi-line statement', (179, 0))
>>
>>
>> ---------------------------------------------------------------------------
>> OSError Traceback (most recent call
>> last)
>>
>> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/IPython/ipmaker.pyc
>> in force_import(modname, force_reload)
>> 61 reload(sys.modules[modname])
>> 62 else:
>> ---> 63 __import__(modname)
>> 64
>> 65
>>
>> /home/grshutt/sage-5.4/local/bin/ipy_profile_sage.py in <module>()
>> 1 import os
>> 2 if 'SAGE_CLEAN' not in os.environ:
>> ----> 3 import sage.misc.misc
>> 4 from sage.misc.interpreter import preparser, _ip
>> 5 preparser(True)
>>
>> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
>> in <module>()
>> 139
>> 140 SAGE_TMP = os.path.join(DOT_SAGE, 'tmp', HOSTNAME,
>> str(os.getpid()))
>> --> 141 sage_makedirs(SAGE_TMP)
>> 142
>> 143 SPYX_TMP = os.path.join(SAGE_TMP, 'spyx')
>>
>> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
>> in sage_makedirs(dir)
>> 74 """
>> 75 try:
>> ---> 76 os.makedirs(dir)
>> 77 except OSError:
>> 78 if not os.path.isdir(dir):
>>
>> /home/grshutt/sage-5.4/local/lib/python/os.pyc in makedirs(name, mode)
>> 155 if tail == curdir: # xxx/newdir/. exists if
>> xxx/newdir exists
>> 156 return
>> --> 157 mkdir(name, mode)
>> 158
>> 159 def removedirs(name):
>>
>> OSError: [Errno 13] Permission denied:
>> '/home/grshutt/.sage/tmp/defoe/7064'
>> Error importing ipy_profile_sage - perhaps you should run %upgrade?
>> WARNING: Loading of ipy_profile_sage failed.
>>
>> <ERROR: name 'sage_prompt' is not defined>
>>
>> I hope this information proves useful in correcting the problem.
>>
>> Best regards,
>>
>> Graham
>>
>> --
>> You received this message because you are subscribed to the Google Groups
>> "sage-support" group.
>> To post to this group, send email to sage-support@googlegroups.com.
>> To unsubscribe from this group, send email to
>> sage-support+unsubscr...@googlegroups.com.
>> Visit this group at http://groups.google.com/group/sage-support?hl=en.
>>
>>
>>
>
> --
> You received this message because you are subscribed to the Google Groups
> "sage-support" group.
> To post to this group, send email to sage-support@googlegroups.com.
> To unsubscribe from this group, send email to
> sage-support+unsubscr...@googlegroups.com.
> Visit this group at http://groups.google.com/group/sage-support?hl=en.
>
>
>
--
.~.
/V\ Jan Groenewald
/( )\ www.aims.ac.za
^^-^^
--
You received this message because you are subscribed to the Google Groups
"sage-support" group.
To post to this group, send email to sage-support@googlegroups.com.
To unsubscribe from this group, send email to
sage-support+unsubscr...@googlegroups.com.
Visit this group at http://groups.google.com/group/sage-support?hl=en.
