Dear grshutt,
Could you run the Sage with sudo permissions? Also, I had more or less the
same problem, if your answer to the previous question is yes. I was
suggested that I move .sage to .sage.backup and it worked like a charm.
I think the following is a cleaner solution (quoting Jan's tip in the
message thread I started):
>Hi KnS,
>Please stop sage, try this command
>sudo mv /home/knsam/.sage/tmp{.broken-permissions}
>And try run sage again.
>Regards,
>Jan
Hope one of the solutions work for you...
On Thu, Nov 15, 2012 at 1:42 AM, grshutt <grsh...@gmail.com> wrote:
> I, too, have encountered two problems installing Sage 5.4.
>
> Here's the output from uname -a:
>
> Linux defoe 2.6.33.3.emp4 #1 SMP PREEMPT Tue Jun 22 08:56:49 EDT 2010 i686
> i686 i386 GNU/Linux
>
> Distribution:
>
> Ubuntu 12.04 LTS
>
> 1. After installing Sage 5.4 via the Update Manager and starting the
> application from the command line I received an error message ending:
>
> OSError: [Errno 13] Permission denied: '/home/grshutt/.sage/tmp/defoe/7064'
> Error importing ipy_profile_sage - perhaps you should run %upgrade?
> WARNING: Loading of ipy_profile_sage failed.
>
> 2. Next, I compiled Sage 5.4 from source and received an error message
> ending:
>
> Testing that Sage starts...
> [2012-11-14 02:38:02] Sage version 5.4, released 2012-11-09
> Yes, Sage starts.
> spkg/pipestatus "./sage --docbuild --no-pdf-links all html 2>&1" "tee -a
> dochtml.log"
> Traceback (most recent call last):
> File "/home/grshutt/sage-5.4/devel/sage/doc/common/builder.py", line 12,
> in <module>
> from sage.misc.misc import sage_makedirs as mkdir
> File
> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
> line 141, in <module>
> sage_makedirs(SAGE_TMP)
> File
> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
> line 76, in sage_makedirs
> os.makedirs(dir)
> File "/home/grshutt/sage-5.4/local/lib/python/os.py", line 157, in
> makedirs
> mkdir(name, mode)
> OSError: [Errno 13] Permission denied:
> '/home/grshutt/.sage/tmp/defoe/31451'
> Error in atexit._run_exitfuncs:
> Traceback (most recent call last):
> File "/home/grshutt/sage-5.4/local/lib/python/atexit.py", line 24, in
> _run_exitfuncs
> func(*targs, **kargs)
> File
> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/temporary_file.py",
> line 48, in delete_tmpfiles
> from sage.misc.misc import SAGE_TMP
> File
> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
> line 141, in <module>
> sage_makedirs(SAGE_TMP)
> File
> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
> line 76, in sage_makedirs
> os.makedirs(dir)
> File "/home/grshutt/sage-5.4/local/lib/python/os.py", line 157, in
> makedirs
> mkdir(name, mode)
> OSError: [Errno 13] Permission denied:
> '/home/grshutt/.sage/tmp/defoe/31451'
> Error in sys.exitfunc:
> Traceback (most recent call last):
> File "/home/grshutt/sage-5.4/local/lib/python/atexit.py", line 24, in
> _run_exitfuncs
> func(*targs, **kargs)
> File
> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/temporary_file.py",
> line 48, in delete_tmpfiles
> from sage.misc.misc import SAGE_TMP
> File
> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
> line 141, in <module>
> sage_makedirs(SAGE_TMP)
> File
> "/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
> line 76, in sage_makedirs
> os.makedirs(dir)
> File "/home/grshutt/sage-5.4/local/lib/python/os.py", line 157, in
> makedirs
> mkdir(name, mode)
> OSError: [Errno 13] Permission denied:
> '/home/grshutt/.sage/tmp/defoe/31451'
> make: *** [doc-html] Error 1
>
> Curious, I again started Sage from the command line and received the
> following error message, which is similar to the message I received after
> installing Sage from the Update Manager and starting the application from
> the command line:
>
> ----------------------------------------------------------------------
> | Sage Version 5.4, Release Date: 2012-11-09 |
> | Type "notebook()" for the browser-based notebook interface. |
> | Type "help()" for help. |
> ----------------------------------------------------------------------
> ERROR: An unexpected error occurred while tokenizing input
> The following traceback may be corrupted or invalid
> The error message is: ('EOF in multi-line statement', (179, 0))
>
> ---------------------------------------------------------------------------
> OSError Traceback (most recent call last)
>
> /home/grshutt/sage-5.4/<string> in <module>()
>
> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/preparser_ipython.py
> in <module>()
> 6
> ###########################################################################
> 7
> ----> 8 import sage.misc.interpreter
> 9
> 10 import preparser
>
> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/interpreter.py
> in <module>()
> 103
> 104 import os
> --> 105 import log
> 106 import re
> 107
>
> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/log.py
> in <module>()
> 64 import interpreter
> 65 import latex
> ---> 66 import misc
> 67
> 68 from sage.misc.viewer import browser, dvi_viewer
>
> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
> in <module>()
> 139
> 140 SAGE_TMP = os.path.join(DOT_SAGE, 'tmp', HOSTNAME,
> str(os.getpid()))
> --> 141 sage_makedirs(SAGE_TMP)
> 142
> 143 SPYX_TMP = os.path.join(SAGE_TMP, 'spyx')
>
> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
> in sage_makedirs(dir)
> 74 """
> 75 try:
> ---> 76 os.makedirs(dir)
> 77 except OSError:
> 78 if not os.path.isdir(dir):
>
> /home/grshutt/sage-5.4/local/lib/python/os.pyc in makedirs(name, mode)
> 155 if tail == curdir: # xxx/newdir/. exists if
> xxx/newdir exists
> 156 return
> --> 157 mkdir(name, mode)
> 158
> 159 def removedirs(name):
>
> OSError: [Errno 13] Permission denied: '/home/grshutt/.sage/tmp/defoe/7064'
> WARNING: Failure executing code: 'import sage.misc.preparser_ipython;
> sage.misc.preparser_ipython.magma_colon_equals=True'
> ERROR: An unexpected error occurred while tokenizing input
> The following traceback may be corrupted or invalid
> The error message is: ('EOF in multi-line statement', (179, 0))
>
> ---------------------------------------------------------------------------
> OSError Traceback (most recent call last)
>
> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/IPython/ipmaker.pyc
> in force_import(modname, force_reload)
> 61 reload(sys.modules[modname])
> 62 else:
> ---> 63 __import__(modname)
> 64
> 65
>
> /home/grshutt/sage-5.4/local/bin/ipy_profile_sage.py in <module>()
> 1 import os
> 2 if 'SAGE_CLEAN' not in os.environ:
> ----> 3 import sage.misc.misc
> 4 from sage.misc.interpreter import preparser, _ip
> 5 preparser(True)
>
> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
> in <module>()
> 139
> 140 SAGE_TMP = os.path.join(DOT_SAGE, 'tmp', HOSTNAME,
> str(os.getpid()))
> --> 141 sage_makedirs(SAGE_TMP)
> 142
> 143 SPYX_TMP = os.path.join(SAGE_TMP, 'spyx')
>
> /home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
> in sage_makedirs(dir)
> 74 """
> 75 try:
> ---> 76 os.makedirs(dir)
> 77 except OSError:
> 78 if not os.path.isdir(dir):
>
> /home/grshutt/sage-5.4/local/lib/python/os.pyc in makedirs(name, mode)
> 155 if tail == curdir: # xxx/newdir/. exists if
> xxx/newdir exists
> 156 return
> --> 157 mkdir(name, mode)
> 158
> 159 def removedirs(name):
>
> OSError: [Errno 13] Permission denied: '/home/grshutt/.sage/tmp/defoe/7064'
> Error importing ipy_profile_sage - perhaps you should run %upgrade?
> WARNING: Loading of ipy_profile_sage failed.
>
> <ERROR: name 'sage_prompt' is not defined>
>
> I hope this information proves useful in correcting the problem.
>
> Best regards,
>
> Graham
>
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