I, too, have encountered two problems installing Sage 5.4.
Here's the output from uname -a:
Linux defoe 2.6.33.3.emp4 #1 SMP PREEMPT Tue Jun 22 08:56:49 EDT 2010 i686
i686 i386 GNU/Linux
Distribution:
Ubuntu 12.04 LTS
1. After installing Sage 5.4 via the Update Manager and starting the
application from the command line I received an error message ending:
OSError: [Errno 13] Permission denied: '/home/grshutt/.sage/tmp/defoe/7064'
Error importing ipy_profile_sage - perhaps you should run %upgrade?
WARNING: Loading of ipy_profile_sage failed.
2. Next, I compiled Sage 5.4 from source and received an error message
ending:
Testing that Sage starts...
[2012-11-14 02:38:02] Sage version 5.4, released 2012-11-09
Yes, Sage starts.
spkg/pipestatus "./sage --docbuild --no-pdf-links all html 2>&1" "tee -a
dochtml.log"
Traceback (most recent call last):
File "/home/grshutt/sage-5.4/devel/sage/doc/common/builder.py", line 12,
in <module>
from sage.misc.misc import sage_makedirs as mkdir
File
"/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
line 141, in <module>
sage_makedirs(SAGE_TMP)
File
"/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
line 76, in sage_makedirs
os.makedirs(dir)
File "/home/grshutt/sage-5.4/local/lib/python/os.py", line 157, in
makedirs
mkdir(name, mode)
OSError: [Errno 13] Permission denied: '/home/grshutt/.sage/tmp/defoe/31451'
Error in atexit._run_exitfuncs:
Traceback (most recent call last):
File "/home/grshutt/sage-5.4/local/lib/python/atexit.py", line 24, in
_run_exitfuncs
func(*targs, **kargs)
File
"/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/temporary_file.py",
line 48, in delete_tmpfiles
from sage.misc.misc import SAGE_TMP
File
"/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
line 141, in <module>
sage_makedirs(SAGE_TMP)
File
"/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
line 76, in sage_makedirs
os.makedirs(dir)
File "/home/grshutt/sage-5.4/local/lib/python/os.py", line 157, in
makedirs
mkdir(name, mode)
OSError: [Errno 13] Permission denied: '/home/grshutt/.sage/tmp/defoe/31451'
Error in sys.exitfunc:
Traceback (most recent call last):
File "/home/grshutt/sage-5.4/local/lib/python/atexit.py", line 24, in
_run_exitfuncs
func(*targs, **kargs)
File
"/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/temporary_file.py",
line 48, in delete_tmpfiles
from sage.misc.misc import SAGE_TMP
File
"/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
line 141, in <module>
sage_makedirs(SAGE_TMP)
File
"/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py",
line 76, in sage_makedirs
os.makedirs(dir)
File "/home/grshutt/sage-5.4/local/lib/python/os.py", line 157, in
makedirs
mkdir(name, mode)
OSError: [Errno 13] Permission denied: '/home/grshutt/.sage/tmp/defoe/31451'
make: *** [doc-html] Error 1
Curious, I again started Sage from the command line and received the
following error message, which is similar to the message I received after
installing Sage from the Update Manager and starting the application from
the command line:
----------------------------------------------------------------------
| Sage Version 5.4, Release Date: 2012-11-09 |
| Type "notebook()" for the browser-based notebook interface. |
| Type "help()" for help. |
----------------------------------------------------------------------
ERROR: An unexpected error occurred while tokenizing input
The following traceback may be corrupted or invalid
The error message is: ('EOF in multi-line statement', (179, 0))
---------------------------------------------------------------------------
OSError Traceback (most recent call last)
/home/grshutt/sage-5.4/<string> in <module>()
/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/preparser_ipython.py
in <module>()
6
###########################################################################
7
----> 8 import sage.misc.interpreter
9
10 import preparser
/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/interpreter.py
in <module>()
103
104 import os
--> 105 import log
106 import re
107
/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/log.py
in <module>()
64 import interpreter
65 import latex
---> 66 import misc
67
68 from sage.misc.viewer import browser, dvi_viewer
/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
in <module>()
139
140 SAGE_TMP = os.path.join(DOT_SAGE, 'tmp', HOSTNAME, str(os.getpid()))
--> 141 sage_makedirs(SAGE_TMP)
142
143 SPYX_TMP = os.path.join(SAGE_TMP, 'spyx')
/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
in sage_makedirs(dir)
74 """
75 try:
---> 76 os.makedirs(dir)
77 except OSError:
78 if not os.path.isdir(dir):
/home/grshutt/sage-5.4/local/lib/python/os.pyc in makedirs(name, mode)
155 if tail == curdir: # xxx/newdir/. exists if
xxx/newdir exists
156 return
--> 157 mkdir(name, mode)
158
159 def removedirs(name):
OSError: [Errno 13] Permission denied: '/home/grshutt/.sage/tmp/defoe/7064'
WARNING: Failure executing code: 'import sage.misc.preparser_ipython;
sage.misc.preparser_ipython.magma_colon_equals=True'
ERROR: An unexpected error occurred while tokenizing input
The following traceback may be corrupted or invalid
The error message is: ('EOF in multi-line statement', (179, 0))
---------------------------------------------------------------------------
OSError Traceback (most recent call last)
/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/IPython/ipmaker.pyc
in force_import(modname, force_reload)
61 reload(sys.modules[modname])
62 else:
---> 63 __import__(modname)
64
65
/home/grshutt/sage-5.4/local/bin/ipy_profile_sage.py in <module>()
1 import os
2 if 'SAGE_CLEAN' not in os.environ:
----> 3 import sage.misc.misc
4 from sage.misc.interpreter import preparser, _ip
5 preparser(True)
/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
in <module>()
139
140 SAGE_TMP = os.path.join(DOT_SAGE, 'tmp', HOSTNAME, str(os.getpid()))
--> 141 sage_makedirs(SAGE_TMP)
142
143 SPYX_TMP = os.path.join(SAGE_TMP, 'spyx')
/home/grshutt/sage-5.4/local/lib/python2.7/site-packages/sage/misc/misc.py
in sage_makedirs(dir)
74 """
75 try:
---> 76 os.makedirs(dir)
77 except OSError:
78 if not os.path.isdir(dir):
/home/grshutt/sage-5.4/local/lib/python/os.pyc in makedirs(name, mode)
155 if tail == curdir: # xxx/newdir/. exists if
xxx/newdir exists
156 return
--> 157 mkdir(name, mode)
158
159 def removedirs(name):
OSError: [Errno 13] Permission denied: '/home/grshutt/.sage/tmp/defoe/7064'
Error importing ipy_profile_sage - perhaps you should run %upgrade?
WARNING: Loading of ipy_profile_sage failed.
<ERROR: name 'sage_prompt' is not defined>
I hope this information proves useful in correcting the problem.
Best regards,
Graham
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