William Stein wrote:
> On Wed, Apr 8, 2009 at 9:30 PM, J Elaych <microsc...@gmail.com> wrote:
>> I'm using Ubuntu 64 bit on amd2 and running sage-3.4.  I download a
>> file, "3D graph with points", from sagenb.com and run the cell.  The
>> interact widgets load and a Jmol splash screen starts and then the
>> entire browser bails.  Fortunately, I can restart previous session and
>> recapture my tabs, but of course I have to quickly delete the tab with
>> the offending worksheet.
>>
>> Here are the messages from the terminal where I started 'sage -
>> notebook'.
>>
>> 2009-04-08 21:21:48-0700 [HTTPChannel,60,127.0.0.1]
>> 2009-04-08 21:22:08-0700 [-] cd "/home/jlh/.sage/temp/jlh_desktop/8472/
>> dir_1"; tar -jxf "/home/jlh/.sage/temp/jlh_desktop/8472/dir_0/3D graph
>> with points.sws"
>> tar: 343/worksheet.txt: implausibly old time stamp 1956-04-03 08:55:47
>> 2009-04-08 21:22:08-0700 [-]
>> 2009-04-08 21:22:33-0700 [HTTPChannel,65,127.0.0.1] Request error:
>> Connection to the other side was lost in a non-clean fashion.
>> 2009-04-08 21:22:56-0700 [HTTPChannel,69,127.0.0.1] Request error:
>> Connection to the other side was lost in a non-clean fashion.
>> 2009-04-08 21:23:19-0700 [HTTPChannel,73,127.0.0.1]
>> 2009-04-08 21:23:43-0700 [HTTPChannel,82,127.0.0.1]
>>
>> The money-lines are the "Request error: ..." which is what prints when
>> the browser dies.  I searched sage-support for that error message but
>> didn't find it, so here it is for the next person who searches.
>>
>> Of course, thanks in advance and all.
>>
> 
> There are known problems on some platforms with jmol, which Jason
> Grout is hopefully tracking down.  


I think I may have helped with some troubleshooting of this in the past, 
but I don't think I was ever seriously working on this.  If someone else 
wants to tackle, go right ahead.  I don't have enough experience with 
Java (especially 64-bit amd systems) to tell what is going on.

However, to start troubleshooting, does the Jmol example work for you 
from the jmol website?  For example, here:

http://jmol.sourceforge.net/demo/atoms/


-Jason


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