Not healthy at all. Sage itself has not been properly linked. Try "./sage -ba" and then see if complex_double.so is still underlinked.
Francois On Thu, 06 Feb 2014 13:09:10 shol...@ualberta.ca wrote: > Well I've attached the config.log from > > ./local/var/tmp/sage/build/gsl-1.15.p1/src/config.log > ./logs/pkgs/gsl*/config.log > > Also, from ./sage -sh; ldd -r ...... > > (sage-sh) sbh@sbh-MacBookPro:sage-6.1.1$ ldd -r > /home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/python2.7/site-packages/sage/rin > gs/complex_double.so > > linux-vdso.so.1 => (0x00007fff6adff000) > libcsage.so => /home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libcsage.so > (0x00007f42910e2000) > libgsl.so.0 => /home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0 > (0x00007f4290eb8000) > libpari-gmp.so.3 => > /home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libpari-gmp.so.3 > (0x00007f4290a2c000) > libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f429071a000) > libpython2.7.so.1.0 => > /home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libpython2.7.so.1.0 > (0x00007f429053a000) > libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 > (0x00007f429031c000) > libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f428ff5c000) > libntl.so.0 => /home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libntl.so.0 > (0x00007f428fd82000) > libgmp.so.11 => > /home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgmp.so.11 > (0x00007f428fd10000) > libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 > (0x00007f428fa10000) > libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 > (0x00007f428f7fa000) > libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f428f5f5000) > libutil.so.1 => /lib/x86_64-linux-gnu/libutil.so.1 (0x00007f428f3f2000) > /lib64/ld-linux-x86-64.so.2 (0x00007f4291137000) > libgf2x.so.1 => > /home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgf2x.so.1 > (0x00007f428f3d9000) > undefined symbol: cblas_sdsdot > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dsdot > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_sdot > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ddot > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cdotu_sub > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cdotc_sub > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zdotu_sub > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zdotc_sub > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_sswap > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dswap > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cswap > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zswap > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_scopy > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dcopy > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ccopy > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zcopy > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_saxpy > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_daxpy > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_caxpy > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zaxpy > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_srotg > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_drotg > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_srot > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_drot > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_srotmg > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_drotmg > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_srotm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_drotm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cscal > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zscal > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_sgemv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dgemv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cgemv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zgemv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_chemv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zhemv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ssymv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dsymv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_strmv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dtrmv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ctrmv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ztrmv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_strsv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dtrsv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ctrsv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ztrsv > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_sger > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dger > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cgeru > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zgeru > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cgerc > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zgerc > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cher > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zher > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cher2 > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zher2 > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ssyr > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dsyr > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ssyr2 > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dsyr2 > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_sgemm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dgemm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cgemm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zgemm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ssymm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dsymm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_csymm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zsymm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_chemm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zhemm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ssyrk > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dsyrk > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_csyrk > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zsyrk > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cherk > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zherk > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ssyr2k > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dsyr2k > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_csyr2k > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zsyr2k > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_cher2k > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zher2k > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_strmm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dtrmm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ctrmm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ztrmm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_strsm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dtrsm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ctrsm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_ztrsm > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_snrm2 > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dnrm2 > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_scnrm2 > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dznrm2 > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_sasum > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dasum > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_scasum > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dzasum > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_isamax > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_idamax > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_icamax > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_izamax > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_sscal > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_dscal > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_csscal > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > undefined symbol: cblas_zdscal > (/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0) > > Thanks, > > Brett > > On Thursday, February 6, 2014 1:26:33 PM UTC-7, François wrote: > > Actually after a closer exam of a standard sage install, > > the underdefinition of libraries (libgsl in particular) > > is built in. Which means that some other part may be > > broken. From the sage shell what does > > ldd -r local/lib/python2.7/site-packages/sage/rings/complex_double.so > > says? > > Francois -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/groups/opt_out.
