Before you proceed with "make" to finish the install check that libgsl is
properly built this time.
ldd -r shouldn't find any undefined symbols and readelf should show libcblas or
libptcblas as one
of its output.
Francois
________________________________________
From: sage-devel@googlegroups.com [sage-devel@googlegroups.com] on behalf of
shol...@ualberta.ca [shol...@ualberta.ca]
Sent: Friday, 7 February 2014 7:36
To: sage-devel@googlegroups.com
Subject: Re: [sage-devel] Error installing package conway_polynomials-0.5.p0 on
Ubuntu 12.04 - Sage 6.1.1
Okay, I ran that command and it said gsl was successfully installed.
Do I then need to complete the building process or can I just run it? If the
former, I suppose I should say
export SAGE_KEEP_BUILT_SPKGS=yes
make
?
Thanks again,
Brett
On Thursday, February 6, 2014 1:58:40 AM UTC-7, François wrote:
OK your gsl install is completely broken but atlas is there.
Can you try to re-install gsl? "./sage -f gsl" should do
the trick. If it still doesn't work post the build log from gsl (found under
logs/pkgs).
Francois
________________________________________
From: sage-...@googlegroups.com [sage-...@googlegroups.com] on behalf of
sho...@ualberta.ca [sho...@ualberta.ca]
Sent: Thursday, 6 February 2014 17:27
To: sage-...@googlegroups.com
Subject: Re: [sage-devel] Error installing package conway_polynomials-0.5.p0 on
Ubuntu 12.04 - Sage 6.1.1
Hi, thank you for the offer of help!
The first command's output (from ./sage -sh) gives:
sbh@sbh-MacBookPro:~/SW/Sage6.1.1/sage-6.1.1$ ./sage -sh
Starting subshell with Sage environment variables set. Don't forget
to exit when you are done. Beware:
* Do not do anything with other copies of Sage on your system.
* Do not use this for installing Sage packages using "sage -i" or for
running "make" at Sage's root directory. These should be done
outside the Sage shell.
Bypassing shell configuration files...
Note: SAGE_ROOT=/home/sbh/SW/Sage6.1.1/sage-6.1.1
(sage-sh) sbh@sbh-MacBookPro:sage-6.1.1$ ldd -r
/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0
linux-vdso.so.1 => (0x00007fffc14ba000)
libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f7c65f56000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f7c65b96000)
/lib64/ld-linux-x86-64.so.2 (0x00007f7c66494000)
undefined symbol: cblas_sdsdot
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dsdot
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_sdot
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ddot
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cdotu_sub
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cdotc_sub
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zdotu_sub
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zdotc_sub
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_sswap
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dswap
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cswap
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zswap
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_scopy
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dcopy
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ccopy
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zcopy
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_saxpy
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_daxpy
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_caxpy
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zaxpy
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_srotg
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_drotg
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_srot
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_drot
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_srotmg
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_drotmg
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_srotm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_drotm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cscal
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zscal
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_sgemv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dgemv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cgemv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zgemv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_chemv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zhemv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ssymv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dsymv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_strmv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dtrmv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ctrmv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ztrmv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_strsv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dtrsv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ctrsv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ztrsv
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_sger
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dger
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cgeru
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zgeru
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cgerc
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zgerc
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cher
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zher
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cher2
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zher2
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ssyr
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dsyr
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ssyr2
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dsyr2
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_sgemm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dgemm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cgemm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zgemm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ssymm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dsymm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_csymm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zsymm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_chemm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zhemm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ssyrk
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dsyrk
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_csyrk
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zsyrk
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cherk
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zherk
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ssyr2k
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dsyr2k
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_csyr2k
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zsyr2k
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_cher2k
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zher2k
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_strmm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dtrmm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ctrmm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ztrmm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_strsm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dtrsm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ctrsm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_ztrsm
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_snrm2
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dnrm2
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_scnrm2
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dznrm2
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_sasum
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dasum
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_scasum
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dzasum
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_isamax
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_idamax
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_icamax
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_izamax
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_sscal
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_dscal
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_csscal
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
undefined symbol: cblas_zdscal
(/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0)
and the output of the second command is:
(sage-sh) sbh@sbh-MacBookPro:sage-6.1.1$ readelf -d
/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0
Dynamic section at offset 0x217b28 contains 24 entries:
Tag Type Name/Value
0x0000000000000003 (PLTGOT) 0x218fe8
0x0000000000000002 (PLTRELSZ) 28272 (bytes)
0x0000000000000017 (JMPREL) 0x45570
0x0000000000000014 (PLTREL) RELA
0x0000000000000007 (RELA) 0x3f2a0
0x0000000000000008 (RELASZ) 25296 (bytes)
0x0000000000000009 (RELAENT) 24 (bytes)
0x000000006ffffff9 (RELACOUNT) 963
0x0000000000000006 (SYMTAB) 0x228
0x000000000000000b (SYMENT) 24 (bytes)
0x0000000000000005 (STRTAB) 0x19b60
0x000000000000000a (STRSZ) 107239 (bytes)
0x000000006ffffef5 (GNU_HASH) 0x33e48
0x0000000000000001 (NEEDED) Shared library: [libm.so.6]
0x0000000000000001 (NEEDED) Shared library: [libc.so.6]
0x000000000000000e (SONAME) Library soname: [libgsl.so.0]
0x000000000000000c (INIT) 0x4c3e0
0x000000000000000d (FINI) 0x1b49f8
0x000000006ffffff0 (VERSYM) 0x3cfe8
0x000000006ffffffc (VERDEF) 0x3f204
0x000000006ffffffd (VERDEFNUM) 1
0x000000006ffffffe (VERNEED) 0x3f220
0x000000006fffffff (VERNEEDNUM) 2
0x0000000000000000 (NULL) 0x0
Lastly, I have ls'd (2 columns wide) the contents of the .../local/lib (in case
you meant cblas - I didn't know for sure)
sbh@sbh-MacBookPro:~/SW/Sage6.1.1/sage-6.1.1/local/lib$ ls
dbmsr.so libmenu.so.5.9
ecl libmenuw.so
ecl-12.12.1 libmenuw.so.5
libatlas.la<http://libatlas.la> libmenuw.so.5.9
libatlas.so libmpc.a
libatlas.so.3 libmpc.la<http://libmpc.la>
libatlas.so.3.0.0 libmpc.so
libbz2.a libmpc.so.3
libcblas.la<http://libcblas.la> libmpc.so.3.0.0
libcblas.so libmpfi.a
libcblas.so.3 libmpfi.la<http://libmpfi.la>
libcblas.so.3.0.0 libmpfi.so
libcdd.a libmpfi.so.0
libcddgmp.a libmpfi.so.0.0.0
libcddgmp.la<http://libcddgmp.la> libmpfr.a
libcddgmp.so libmpfr.la<http://libmpfr.la>
libcddgmp.so.0 libmpfr.so
libcddgmp.so.0.0.0 libmpfr.so.4
libcdd.la<http://libcdd.la> libmpfr.so.4.1.2
libcdd.so libmpir.a
libcdd.so.0 libmpir.la<http://libmpir.la>
libcdd.so.0.0.0 libmpir.so
libcf.a libmpir.so.11
libcfmem.a libmpir.so.11.0.0
libcliquer.so libmpirxx.a
libcord.a libmpirxx.la<http://libmpirxx.la>
libcord.la<http://libcord.la> libmpirxx.so
libcord.so libmpirxx.so.4
libcord.so.1 libmpirxx.so.4.0.21
libcord.so.1.0.3 libncurses++.a
libcsage.so libncurses.so
libcurses.so libncurses.so.5
libec.a libncurses.so.5.9
libec.la<http://libec.la> libncurses++w.a
libecl.so libncursesw.so
libecl.so.12 libncursesw.so.5
libecl.so.12.12 libncursesw.so.5.9
libecl.so.12.12.1 libntl.a
libecm.a libntl.la<http://libntl.la>
libecm.la<http://libecm.la> libntl.so
libec.so libntl.so.0
libec.so.0 libntl.so.0.1.0
libec.so.0.0.0 libomalloc.a
libf77blas.la<http://libf77blas.la> libomalloc_ndebug.a
libf77blas.so libpanel.so
libf77blas.so.3 libpanel.so.5
libf77blas.so.3.0.0 libpanel.so.5.9
libflint.a libpanelw.so
libflint.so libpanelw.so.5
libform.so libpanelw.so.5.9
libform.so.5 libpari.a
libform.so.5.9 libpari-gmp.so.2.5.5
libformw.so libpari-gmp.so.3
libformw.so.5 libpari.so
libformw.so.5.9 libpng12.a
libfplll.a libpng12.la<http://libpng12.la>
libfplll.la<http://libfplll.la> libpng12.so
libfplll.so libpng12.so.0
libfplll.so.0 libpng12.so.0.35.0
libfplll.so.0.1.0 libpng.a
libfreetype.a libpng.la<http://libpng.la>
libfreetype.la<http://libfreetype.la> libpng.so
libfreetype.so libpng.so.3
libfreetype.so.6 libpng.so.3.35.0
libfreetype.so.6.11.1 libpolybori-0.8.so<http://libpolybori-0.8.so>
libgap.la<http://libgap.la> libpolybori-0.8.so.3
libgap.so libpolybori-0.8.so.3.0.0
libgap.so.0
libpolybori_groebner-0.8.so<http://libpolybori_groebner-0.8.so>
libgap.so.0.0.0 libpolybori_groebner-0.8.so.3
libgc.a libpolybori_groebner-0.8.so.3.0.0
libgc.la<http://libgc.la> libpolybori_groebner.so
libgc.so libpolybori.so
libgc.so.1 libppl.a
libgc.so.1.0.3 libppl_c.a
libgd.a libppl_c.la<http://libppl_c.la>
libgd.la<http://libgd.la> libppl_c.so
libgd.so libppl_c.so.4
libgd.so.2 libppl_c.so.4.0.0
libgd.so.2.0.0 libppl.la<http://libppl.la>
libgf2x.a libppl.so
libgf2x.la<http://libgf2x.la> libppl.so.13
libgf2x.so libppl.so.13.0.0
libgf2x.so.1 libptcblas.la<http://libptcblas.la>
libgf2x.so.1.0.0 libptcblas.so
libgivaro.a libptcblas.so.3
libgivaro.la<http://libgivaro.la> libptcblas.so.3.0.0
libgivaro.so libptf77blas.la<http://libptf77blas.la>
libgivaro.so.0 libptf77blas.so
libgivaro.so.0.5.1 libptf77blas.so.3
libglpk.la<http://libglpk.la> libptf77blas.so.3.0.0
libglpk.so libptlapack.la<http://libptlapack.la>
libglpk.so.0 libptlapack.so
libglpk.so.0.29.0 libptlapack.so.3
libgmp.a libptlapack.so.3.0.0
libgmp.la<http://libgmp.la> libpynac.la<http://libpynac.la>
libgmp.so libpynac.so
libgmp.so.11 libpynac.so.0
libgmp.so.11.0.0 libpynac.so.0.0.0
libgmpxx.a libpython2.7.so<http://libpython2.7.so>
libgmpxx.la<http://libgmpxx.la> libpython2.7.so.1.0
libgmpxx.so libratpoints.a
libgmpxx.so.4 libreadline.so
libgmpxx.so.4.0.21 libreadline.so.6
libgsl.a libreadline.so.6.2
libgslcblas.a libsatlas.so
libgslcblas.la<http://libgslcblas.la> libsingcf.a
libgslcblas.so libsingcf_g.a
libgslcblas.so.0 libsingfac.a
libgslcblas.so.0.0.0 libsingfac_g.a
libgsl.la<http://libgsl.la> libsingular.so
libgsl.so libsqlite3.a
libgsl.so.0 libsqlite3.la<http://libsqlite3.la>
libgsl.so.0.16.0 libsqlite3.so
libhistory.so libsqlite3.so.0
libhistory.so.6 libsqlite3.so.0.8.6
libhistory.so.6.2 libsymmetrica.a
libiml.a libtatlas.so
libiml.la<http://libiml.la> libtinfo.so
libiml.so libtinfo.so.5
libiml.so.0 libtinfo.so.5.9
libiml.so.0.0.0 libtinfow.so
liblapack.la<http://liblapack.la> libtinfow.so.5
liblapack.so libtinfow.so.5.9
liblapack.so.3 libyasm.a
liblapack.so.3.0.0 libz.a
libLfunction.so libzn_poly-0.9.so<http://libzn_poly-0.9.so>
liblinbox.la<http://liblinbox.la> libzn_poly.so
liblinboxsage.la<http://liblinboxsage.la> libz.so
liblinboxsage.so libz.so.1
liblinboxsage.so.0 libz.so.1.2.8
liblinboxsage.so.0.0.0 omalloc_debug.o
liblinbox.so omalloc.o
liblinbox.so.0 pari
liblinbox.so.0.0.0 pkgconfig
libm4ri-0.0.20121224.so<http://libm4ri-0.0.20121224.so>
p_Procs_FieldGeneral.so
libm4ri.a p_Procs_FieldIndep.so
libm4rie-0.0.20130416.so<http://libm4rie-0.0.20130416.so> p_Procs_FieldQ.so
libm4rie.a p_Procs_FieldZp.so
libm4rie.la<http://libm4rie.la> python
libm4rie.so python2.7
libm4ri.la<http://libm4ri.la> sage-force-relocate.txt
libm4ri.so scons-1.2.0
libmenu.so terminfo
libmenu.so.5
In the above list are the following though....
sbh@sbh-MacBookPro:~/SW/Sage6.1.1/sage-6.1.1/local/lib$ ls libcblas.so.*
libcblas.so.3 libcblas.so.3.0.0
Thanks again!!
Brett
On Wednesday, February 5, 2014 7:29:10 PM UTC-7, François wrote:
Can you start a sage shell(./sage -sh from the root directory of the tarball)?
If so start one and give the output of
ldd -r /home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0
and
readelf -d /home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0
Also do you have libclas.so.* in local/lib?
François
________________________________________
From: sage-...@googlegroups.com [sage-...@googlegroups.com] on behalf of
sho...@ualberta.ca [sho...@ualberta.ca]
Sent: Thursday, 6 February 2014 12:40
To: sage-...@googlegroups.com
Subject: [sage-devel] Error installing package conway_polynomials-0.5.p0 on
Ubuntu 12.04 - Sage 6.1.1
Hello, after installing all prerequisites and updating, I downloaded the latest
Sage source code, sage-6.1.1.tar.gz. After unpacking all I did was type
export SAGE64=yes
and then I just typed
make.
My laptop is a MacBook Pro (4,1) running Ubuntu 12.04LTS, 3.8GiB, Intel Core 2
Duo CPU T8300 @ 2.4GHz x 2 with 300 GB free.
Copy and pasted below is the relevant spkg log file.
I would like to be able to finalize install of Sage.
Thank you!
**********************************************************
Found local metadata for conway_polynomials-0.4.p0
Found local sources at
/home/sbh/SW/Sage6.1.1/sage-6.1.1/upstream/conway_polynomials-0.4.tar.bz2
Checksum: 25b7abe5c935d20c3ebcde943308652c412d14dc vs
25b7abe5c935d20c3ebcde943308652c412d14dc
conway_polynomials-0.4.p0
====================================================
Setting up build directory for conway_polynomials-0.4.p0
Finished set up
****************************************************
Host system:
Linux sbh-MacBookPro 3.2.0-58-generic #88-Ubuntu SMP Tue Dec 3 17:37:58 UTC
2013 x86_64 x86_64 x86_64 GNU/Linux
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro
4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs
--enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr
--program-suffix=-4.6 --enable-shared --enable-linker-build-id
--with-system-zlib --libexecdir=/usr/lib --without-included-gettext
--enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6
--libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
--enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object
--enable-plugin --enable-objc-gc --disable-werror --with-arch-32=i686
--with-tune=generic --enable-checking=release --build=x86_64-linux-gnu
--host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
****************************************************
Traceback (most recent call last):
File "./spkg-install", line 4, in <module>
from sage.all import save
File
"/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/python2.7/site-packages/sage/all.py",
line 86, in <module>
from sage.misc.all import * # takes a while
File
"/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/python2.7/site-packages/sage/misc/all.py",
line 93, in <module>
from functional import (additive_order,
File
"/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/python2.7/site-packages/sage/misc/functional.py",
line 36, in <module>
from sage.rings.complex_double import CDF
ImportError: /home/sbh/SW/Sage6.1.1/sage-6.1.1/local/lib/libgsl.so.0: undefined
symbol: cblas_sdsdot
real 0m1.490s
user 0m0.304s
sys 0m0.136s
************************************************************************
Error installing package conway_polynomials-0.4.p0
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the relevant part of the log file
/home/sbh/SW/Sage6.1.1/sage-6.1.1/logs/pkgs/conway_polynomials-0.4.p0.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/var/tmp/sage/build/conway_polynomials-0.4.p0
and type 'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd
'/home/sbh/SW/Sage6.1.1/sage-6.1.1/local/var/tmp/sage/build/conway_polynomials-0.4.p0'
&& '/home/sbh/SW/Sage6.1.1/sage-6.1.1/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
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