Hi Anne, I am sorry, why all of a sudden you have Homebrew installed in /usr/local, even though in the previous iteration it was in /opt ? Do you have a wrong arch copy of Homebrew on your M1 machine? (and if so, why?)
Or is it a different, x86_64, machine? Assuming you're on an arm64, your brew should be in /opt/, not on /usr/local, too. Wrong order of things in PATH? Please make sure that /opt things come before /usr/local things in your path, and re-run the whole things. Best Dima On Thu, Sep 26, 2024 at 7:58 PM Anne Schilling <anne1.schill...@gmail.com> wrote: > > Hi Dima, > > I appreciate all your help! > > In a new terminal, I did > > source .homebrew-build-env > echo $PKG_CONFIG_PATH > /usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/readline/lib/pkgconfig:/usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/openblas/lib/pkgconfig:/usr/local/lib/pkgconfig: > > ./configure > make > > ... > [openblas-0.3.26] /Users/anne/sage/sage/config.log > [openblas-0.3.26] Describe your computer, operating system, etc. > [openblas-0.3.26] If you want to try to fix the problem yourself, *don't* > just cd to > [openblas-0.3.26] > /Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26 and type > 'make' or whatever is appropriate. > [openblas-0.3.26] Instead, the following commands setup all environment > variables > [openblas-0.3.26] correctly and load a subshell for you to debug the error: > [openblas-0.3.26] (cd > '/Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26' && > '/Users/anne/sage/sage/sage' --buildsh) > [openblas-0.3.26] When you are done debugging, you can type "exit" to leave > the subshell. > [openblas-0.3.26] > ************************************************************************ > [openblas-0.3.26] real 4m38.340s user 3m6.887s sys 1m6.485s > make[4]: *** [openblas-SAGE_LOCAL-no-deps] Error 1 > make[3]: *** > [/Users/anne/sage/sage/local/var/lib/sage/installed/openblas-0.3.26] Error 2 > make[2]: *** [all-start] Error 2 > *************************************************************** > Error building Sage. > > The following package(s) may have failed to build (not necessarily > during this run of 'make all-start'): > > * package: m4ri-20200125 > last build time: Sep 26 11:51 > log file: /Users/anne/sage/sage/logs/pkgs/m4ri-20200125.log > build directory: > /Users/anne/sage/sage/local/var/tmp/sage/build/m4ri-20200125 > > * package: openblas-0.3.26 > last build time: Sep 26 11:55 > log file: /Users/anne/sage/sage/logs/pkgs/openblas-0.3.26.log > build directory: > /Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26 > > It is safe to delete any log files and build directories, but they > contain information that is helpful for debugging build problems. > WARNING: If you now run 'make' again, the build directory of the > same version of the package will, by default, be deleted. Set the > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. > > real 8m1.762s user 12m32.628s sys 5m29.871s > make[1]: *** [all-start] Error 1 > make: *** [all] Error 2 > > Best wishes, > > Anne > > On Thursday, September 26, 2024 at 1:10:39 AM UTC-7 dim...@gmail.com wrote: >> >> Hi Anne, >> sorry for this mess. >> This config.log (which you sent only to me) looks fine, openblas is >> detected. What's not fine is >> PKG_CONFIG_PATH value, which is over 4K characters long. >> That's insanely long, with lots and lots of repeated entries. >> It's actually not the only environment variable which grows with each >> sourcing. >> There are also LIBRARY_PATH, CPATH, PATH, etc (you can read >> .homebrew-build-environment for a complete list) >> :-( >> It could be that's they are so long that it breaks things. >> >> This came from repeated sourcing of .homebrew-build-env >> Our instructions say that "source .homebrew-build-env" should only be >> run once in given terminal session. >> That's obviously not well-aligned with repeatedly installing more and >> more homebrew packages, after which round >> values of PKG_CONFIG_PATH might need to be updated, and needs another >> round of "source .homebrew-build-env". >> >> Indeed, PKG_CONFIG_PATH grows after each sourcing, >> as you can check by repeatedly running >> >> source .homebrew-build-env >> echo $PKG_CONFIG_PATH >> >> I'll open a GitHub issue to deal with it. >> As a workaround, could you please open a new ternimal, run there >> "source .homebrew-build-env" followed by "./configure", and check >> that PKG_CONFIG_PATH >> is of reasonable length (by running "echo $PKG_CONFIG_PATH"), >> something like I see on our M1 machine: >> PKG_CONFIG_PATH='/opt/homebrew/opt/sqlite/lib/pkgconfig:/opt/homebrew/opt/readline/lib/pkgconfig:/opt/homebrew/opt/openssl/lib/pkgconfig:/opt/homebrew/opt/openblas/lib/pkgconfig:/opt/homebrew/lib/pkgconfig:' >> >> Then run "make", if it's OK. >> >> HTH >> Dima >> >> On Thursday, September 26, 2024 at 12:49:24 AM UTC+1 anne1.s...@gmail.com >> wrote: >>> >>> Hi Dima, >>> >>> Yes, I have openblas installed via brew and just reinstalled it again and >>> get the same error message. >>> >>> Best wishes, >>> >>> Anne >>> >>> On Wednesday, September 25, 2024 at 1:41:01 PM UTC-7 dim...@gmail.com wrote: >>>> >>>> On Wed, Sep 25, 2024 at 8:18 PM Anne Schilling >>>> <anne1.s...@gmail.com> wrote: >>>> > Thanks! I followed the instructions, then ran ./configure and make and >>>> > got the following: >>>> >>>> Do you have openblas installed via brew? >>>> This would be probably the easiest - otherwise we might need an >>>> upgrade of openblas >>>> (ours it probably too old for macOS 15.0) >>>> >>>> >>>> >>>> > >>>> > ... >>>> > CNAME=\"\" -DNO_AFFINITY -I. -O2 -DMAX_STACK_ALLOC=2048 -Wall >>>> > -DF_INTERFACE_GFORT -fPIC -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=10 >>>> > -DMAX_PARALLEL_NUMBER=1 -DUSE_TLS -DBUILD_SINGLE=1 -DBUILD_DOUBLE=1 >>>> > -DBUILD_COMPLEX=1 -DBUILD_COMPLEX16=1 -DVERSION=\"0.3.26\" -UASMNAME >>>> > -UASMFNAME -UNAME -UCNAME -UCHAR_NAME -UCHAR_CNAME -DASMNAME=_samax_k >>>> > -DASMFNAME=_samax_k_ -DNAME=samax_k_ -DCNAME=samax_k >>>> > -DCHAR_NAME=\"samax_k_\" -DCHAR_CNAME=\"samax_k\" -DNO_AFFINITY -I.. >>>> > -UDOUBLE -UCOMPLEX -UCOMPLEX -UDOUBLE -DUSE_ABS -UUSE_MIN >>>> > ../kernel/arm64/amax.S -o samax_k.o >>>> > [openblas-0.3.26] [spkg-install] make[6]: *** No rule to make target >>>> > `../kernel/arm64/amin.S', needed by `samin_k.o'. Stop. >>>> > [openblas-0.3.26] [spkg-install] make[5]: *** [libs] Error 1 >>>> > [openblas-0.3.26] [spkg-install] >>>> > ******************************************************************************** >>>> > [openblas-0.3.26] [spkg-install] Error building openblas-0.3.26 >>>> > [openblas-0.3.26] [spkg-install] >>>> > ******************************************************************************** >>>> > [openblas-0.3.26] >>>> > ************************************************************************ >>>> > [openblas-0.3.26] Error installing package openblas-0.3.26 >>>> > [openblas-0.3.26] >>>> > ************************************************************************ >>>> > [openblas-0.3.26] Please email sage-devel >>>> > (http://groups.google.com/group/sage-devel) >>>> > [openblas-0.3.26] explaining the problem and including the log files >>>> > [openblas-0.3.26] /Users/anne/sage/sage/logs/pkgs/openblas-0.3.26.log >>>> > [openblas-0.3.26] and >>>> > [openblas-0.3.26] /Users/anne/sage/sage/config.log >>>> > [openblas-0.3.26] Describe your computer, operating system, etc. >>>> > [openblas-0.3.26] If you want to try to fix the problem yourself, >>>> > *don't* just cd to >>>> > [openblas-0.3.26] >>>> > /Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26 and type >>>> > 'make' or whatever is appropriate. >>>> > [openblas-0.3.26] Instead, the following commands setup all environment >>>> > variables >>>> > [openblas-0.3.26] correctly and load a subshell for you to debug the >>>> > error: >>>> > [openblas-0.3.26] (cd >>>> > '/Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26' && >>>> > '/Users/anne/sage/sage/sage' --buildsh) >>>> > [openblas-0.3.26] When you are done debugging, you can type "exit" to >>>> > leave the subshell. >>>> > [openblas-0.3.26] >>>> > ************************************************************************ >>>> > [openblas-0.3.26] real 4m31.252s user 3m3.040s sys 1m4.242s >>>> > make[4]: *** [openblas-SAGE_LOCAL-no-deps] Error 1 >>>> > make[3]: *** >>>> > [/Users/anne/sage/sage/local/var/lib/sage/installed/openblas-0.3.26] >>>> > Error 2 >>>> > make[2]: *** [all-start] Error 2 >>>> > *************************************************************** >>>> > Error building Sage. >>>> > >>>> > The following package(s) may have failed to build (not necessarily >>>> > during this run of 'make all-start'): >>>> > >>>> > * package: m4ri-20200125 >>>> > last build time: Sep 25 12:11 >>>> > log file: /Users/anne/sage/sage/logs/pkgs/m4ri-20200125.log >>>> > build directory: >>>> > /Users/anne/sage/sage/local/var/tmp/sage/build/m4ri-20200125 >>>> > >>>> > * package: openblas-0.3.26 >>>> > last build time: Sep 25 12:15 >>>> > log file: /Users/anne/sage/sage/logs/pkgs/openblas-0.3.26.log >>>> > build directory: >>>> > /Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26 >>>> > >>>> > It is safe to delete any log files and build directories, but they >>>> > contain information that is helpful for debugging build problems. >>>> > WARNING: If you now run 'make' again, the build directory of the >>>> > same version of the package will, by default, be deleted. Set the >>>> > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >>>> > >>>> > real 4m31.928s user 9m1.974s sys 2m44.265s >>>> > make[1]: *** [all-start] Error 1 >>>> > make: *** [all] Error 2 >>>> > >>>> > Best wishes, >>>> > >>>> > Anne >>>> > >>>> > On Wednesday, September 25, 2024 at 9:33:00 AM UTC-7 dim...@gmail.com >>>> > wrote: >>>> >> >>>> >> Well, while in Rome, do as Romans do? :-) >>>> >> From your log: >>>> >> >>>> >> hint: On your system (homebrew), you can install the required system >>>> >> packages as follows: >>>> >> >>>> >> $ brew install autoconf automake libtool pkg-config >>>> >> >>>> >> On Wed, Sep 25, 2024 at 4:45 PM Anne Schilling >>>> >> <anne1.s...@gmail.com> wrote: >>>> >> > >>>> >> > Hi Dima and Kwankyu, >>>> >> > >>>> >> > Thank you so much for your help! >>>> >> > >>>> >> > Dima, I have >>>> >> > >>>> >> > export PATH=$PATH:/Users/anne/Library/ >>>> >> > >>>> >> > in my .bashrc file. But when I take out this line the command >>>> >> > >>>> >> > ./bootstrap >>>> >> > >>>> >> > gives a failure >>>> >> > >>>> >> > ... >>>> >> > /bootstrap:85: installing src/doc/en/reference/spkg/*.rst >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_environment/src/pyproject.toml >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_environment/src/requirements-editable.txt >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_environment/src/requirements.txt >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_mcqd/src/pyproject.toml >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_mcqd/src/requirements.txt >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_meataxe/src/pyproject.toml >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_meataxe/src/requirements.txt >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_objects/src/pyproject.toml >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_objects/src/requirements-editable.txt >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_objects/src/requirements.txt >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_repl/src/pyproject.toml >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_repl/src/requirements-editable.txt >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_repl/src/requirements.txt >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_sirocco/src/pyproject.toml >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_sirocco/src/requirements.txt >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_tdlib/src/pyproject.toml >>>> >> > ./bootstrap: installing >>>> >> > /Users/anne/sage/sage/build/pkgs/sagemath_tdlib/src/requirements.txt >>>> >> > ./bootstrap-conda:84: generate conda environment files >>>> >> > ./bootstrap: line 143: aclocal: command not found >>>> >> > Bootstrap failed. Either install autotools; or run bootstrap with >>>> >> > the -d option to download the auto-generated files instead. >>>> >> > >>>> >> > hint: On your system (homebrew), you can install the required system >>>> >> > packages as follows: >>>> >> > $ brew install autoconf automake libtool pkg-config >>>> >> > >>>> >> > Homebrew can issue suggestions regarding keg-only packages. >>>> >> > The following command is to automatically apply these suggestions >>>> >> > for packages relevant for Sage to make them available for the build. >>>> >> > Run it once to apply the suggestions for the current session. >>>> >> > Add it to your shell profile to apply them for all future sessions. >>>> >> > >>>> >> > $ source /Users/anne/sage/sage/.homebrew-build-env >>>> >> > >>>> >> > Best wishes, >>>> >> > >>>> >> > Anne >>>> >> > >>>> >> > On Wednesday, September 25, 2024 at 1:00:48 AM UTC-7 dim...@gmail.com >>>> >> > wrote: >>>> >> >> >>>> >> >> these PATH entries look very suspect. >>>> >> >> You don't want any of these Python things in your PATH. >>>> >> >> >>>> >> >> PATH: /Library/Frameworks/Python.framework/Versions/3.7/bin/ >>>> >> >> PATH: /Library/Frameworks/Python.framework/Versions/2.7/bin/ >>>> >> >> PATH: /Library/Frameworks/Python.framework/Versions/Current/bin/ >>>> >> >> >>>> >> >> On Tue, Sep 24, 2024 at 11:32 PM Anne Schilling >>>> >> >> <anne1.s...@gmail.com> wrote: >>>> >> >> > >>>> >> >> > Ok, sorry, here is the result after >>>> >> >> > >>>> >> >> > make distclean >>>> >> >> > source .homebrew-build-env >>>> >> >> > ./bootstrap >>>> >> >> > ./configure --enable-system-site-packages >>>> >> >> > >>>> >> >> > Best wishes, >>>> >> >> > >>>> >> >> > Anne >>>> >> >> > >>>> >> >> > On Tuesday, September 24, 2024 at 3:22:06 PM UTC-7 John H Palmieri >>>> >> >> > wrote: >>>> >> >> >> >>>> >> >> >> On Tuesday, September 24, 2024 at 3:19:07 PM UTC-7 >>>> >> >> >> dim...@gmail.com wrote: >>>> >> >> >> >>>> >> >> >> From the log: >>>> >> >> >> >>>> >> >> >> ./configure --enable-system-site-packagesls (SIC!) >>>> >> >> >> >>>> >> >> >> >>>> >> >> >> ## Checking whether SageMath should install SPKG scipy... ## >>>> >> >> >> ## ------------------------------------------------------ ## >>>> >> >> >> configure:90867: checking whether any of openblas is installed as >>>> >> >> >> or >>>> >> >> >> will be installed as SPKG >>>> >> >> >> configure:90877: result: no >>>> >> >> >> configure:90881: checking if --enable-system-site-packages was >>>> >> >> >> used >>>> >> >> >> configure:90939: result: no; skipping check >>>> >> >> >> configure:90976: no suitable system package found for SPKG scipy >>>> >> >> >> >>>> >> >> >> So please run >>>> >> >> >> >>>> >> >> >> ./configure --enable-system-site-packages >>>> >> >> >> >>>> >> >> >> without a typo. >>>> >> >> >> >>>> >> >> >> >>>> >> >> >> And it might not hurt to first run "make distclean" before doing >>>> >> >> >> everything else (in case you're not already doing this). >>>> >> >> >> >>>> >> >> >> -- >>>> >> >> >> John >>>> >> >> >> >>>> >> >> >> >>>> >> >> >> >>>> >> >> > >>>> >> >> > -- >>>> >> >> > You received this message because you are subscribed to the Google >>>> >> >> > Groups "sage-devel" group. >>>> >> >> > To unsubscribe from this group and stop receiving emails from it, >>>> >> >> > send an email to sage-devel+...@googlegroups.com. >>>> >> >> > To view this discussion on the web visit >>>> >> >> > https://groups.google.com/d/msgid/sage-devel/51990537-59a2-4fce-9993-b322ada6c10fn%40googlegroups.com. >>>> >> > >>>> >> > -- >>>> >> > You received this message because you are subscribed to the Google >>>> >> > Groups "sage-devel" group. >>>> >> > To unsubscribe from this group and stop receiving emails from it, >>>> >> > send an email to sage-devel+...@googlegroups.com. >>>> >> > To view this discussion on the web visit >>>> >> > https://groups.google.com/d/msgid/sage-devel/da1e14fb-20a7-4e34-bc63-19016b03f588n%40googlegroups.com. >>>> > >>>> > -- >>>> > You received this message because you are subscribed to the Google >>>> > Groups "sage-devel" group. >>>> > To unsubscribe from this group and stop receiving emails from it, send >>>> > an email to sage-devel+...@googlegroups.com. >>>> > To view this discussion on the web visit >>>> > https://groups.google.com/d/msgid/sage-devel/fdbca53b-c231-496f-a2d5-36d5062a33ecn%40googlegroups.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/5668cf7f-387f-40e1-a87d-93ba0a910a7dn%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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