Hi Anne, sorry for this mess. This config.log (which you sent only to me) looks fine, openblas is detected. What's not fine is PKG_CONFIG_PATH value, which is over 4K characters long. That's insanely long, with lots and lots of repeated entries. It's actually not the only environment variable which grows with each sourcing. There are also LIBRARY_PATH, CPATH, PATH, etc (you can read .homebrew-build-environment for a complete list) :-( It could be that's they are so long that it breaks things.
This came from repeated sourcing of .homebrew-build-env Our instructions say that "source .homebrew-build-env" should only be run once in given terminal session. That's obviously not well-aligned with repeatedly installing more and more homebrew packages, after which round values of PKG_CONFIG_PATH might need to be updated, and needs another round of "source .homebrew-build-env". Indeed, PKG_CONFIG_PATH grows after each sourcing, as you can check by repeatedly running source .homebrew-build-env echo $PKG_CONFIG_PATH I'll open a GitHub issue to deal with it. As a workaround, could you please open a new ternimal, run there "source .homebrew-build-env" followed by "./configure", and check that PKG_CONFIG_PATH is of reasonable length (by running "echo $PKG_CONFIG_PATH"), something like I see on our M1 machine: PKG_CONFIG_PATH='/opt/homebrew/opt/sqlite/lib/pkgconfig:/ opt/homebrew/opt/readline/lib/pkgconfig:/opt/homebrew/opt/ openssl/lib/pkgconfig:/opt/homebrew/opt/openblas/lib/ pkgconfig:/opt/homebrew/lib/pkgconfig:' Then run "make", if it's OK. HTH Dima On Thursday, September 26, 2024 at 12:49:24 AM UTC+1 anne1.s...@gmail.com wrote: > Hi Dima, > > Yes, I have openblas installed via brew and just reinstalled it again and > get the same error message. > > Best wishes, > > Anne > > On Wednesday, September 25, 2024 at 1:41:01 PM UTC-7 dim...@gmail.com > wrote: > >> On Wed, Sep 25, 2024 at 8:18 PM Anne Schilling >> <anne1.s...@gmail.com> wrote: >> > Thanks! I followed the instructions, then ran ./configure and make and >> got the following: >> >> Do you have openblas installed via brew? >> This would be probably the easiest - otherwise we might need an >> upgrade of openblas >> (ours it probably too old for macOS 15.0) >> >> >> >> > >> > ... >> > CNAME=\"\" -DNO_AFFINITY -I. -O2 -DMAX_STACK_ALLOC=2048 -Wall >> -DF_INTERFACE_GFORT -fPIC -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=10 >> -DMAX_PARALLEL_NUMBER=1 -DUSE_TLS -DBUILD_SINGLE=1 -DBUILD_DOUBLE=1 >> -DBUILD_COMPLEX=1 -DBUILD_COMPLEX16=1 -DVERSION=\"0.3.26\" -UASMNAME >> -UASMFNAME -UNAME -UCNAME -UCHAR_NAME -UCHAR_CNAME -DASMNAME=_samax_k >> -DASMFNAME=_samax_k_ -DNAME=samax_k_ -DCNAME=samax_k >> -DCHAR_NAME=\"samax_k_\" -DCHAR_CNAME=\"samax_k\" -DNO_AFFINITY -I.. >> -UDOUBLE -UCOMPLEX -UCOMPLEX -UDOUBLE -DUSE_ABS -UUSE_MIN >> ../kernel/arm64/amax.S -o samax_k.o >> > [openblas-0.3.26] [spkg-install] make[6]: *** No rule to make target >> `../kernel/arm64/amin.S', needed by `samin_k.o'. Stop. >> > [openblas-0.3.26] [spkg-install] make[5]: *** [libs] Error 1 >> > [openblas-0.3.26] [spkg-install] >> ******************************************************************************** >> >> >> > [openblas-0.3.26] [spkg-install] Error building openblas-0.3.26 >> > [openblas-0.3.26] [spkg-install] >> ******************************************************************************** >> >> >> > [openblas-0.3.26] >> ************************************************************************ >> > [openblas-0.3.26] Error installing package openblas-0.3.26 >> > [openblas-0.3.26] >> ************************************************************************ >> > [openblas-0.3.26] Please email sage-devel ( >> http://groups.google.com/group/sage-devel) >> > [openblas-0.3.26] explaining the problem and including the log files >> > [openblas-0.3.26] /Users/anne/sage/sage/logs/pkgs/openblas-0.3.26.log >> > [openblas-0.3.26] and >> > [openblas-0.3.26] /Users/anne/sage/sage/config.log >> > [openblas-0.3.26] Describe your computer, operating system, etc. >> > [openblas-0.3.26] If you want to try to fix the problem yourself, >> *don't* just cd to >> > [openblas-0.3.26] >> /Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26 and type >> 'make' or whatever is appropriate. >> > [openblas-0.3.26] Instead, the following commands setup all environment >> variables >> > [openblas-0.3.26] correctly and load a subshell for you to debug the >> error: >> > [openblas-0.3.26] (cd >> '/Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26' && >> '/Users/anne/sage/sage/sage' --buildsh) >> > [openblas-0.3.26] When you are done debugging, you can type "exit" to >> leave the subshell. >> > [openblas-0.3.26] >> ************************************************************************ >> > [openblas-0.3.26] real 4m31.252s user 3m3.040s sys 1m4.242s >> > make[4]: *** [openblas-SAGE_LOCAL-no-deps] Error 1 >> > make[3]: *** >> [/Users/anne/sage/sage/local/var/lib/sage/installed/openblas-0.3.26] Error >> 2 >> > make[2]: *** [all-start] Error 2 >> > *************************************************************** >> > Error building Sage. >> > >> > The following package(s) may have failed to build (not necessarily >> > during this run of 'make all-start'): >> > >> > * package: m4ri-20200125 >> > last build time: Sep 25 12:11 >> > log file: /Users/anne/sage/sage/logs/pkgs/m4ri-20200125.log >> > build directory: >> /Users/anne/sage/sage/local/var/tmp/sage/build/m4ri-20200125 >> > >> > * package: openblas-0.3.26 >> > last build time: Sep 25 12:15 >> > log file: /Users/anne/sage/sage/logs/pkgs/openblas-0.3.26.log >> > build directory: >> /Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26 >> > >> > It is safe to delete any log files and build directories, but they >> > contain information that is helpful for debugging build problems. >> > WARNING: If you now run 'make' again, the build directory of the >> > same version of the package will, by default, be deleted. Set the >> > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >> > >> > real 4m31.928s user 9m1.974s sys 2m44.265s >> > make[1]: *** [all-start] Error 1 >> > make: *** [all] Error 2 >> > >> > Best wishes, >> > >> > Anne >> > >> > On Wednesday, September 25, 2024 at 9:33:00 AM UTC-7 dim...@gmail.com >> wrote: >> >> >> >> Well, while in Rome, do as Romans do? :-) >> >> From your log: >> >> >> >> hint: On your system (homebrew), you can install the required system >> >> packages as follows: >> >> >> >> $ brew install autoconf automake libtool pkg-config >> >> >> >> On Wed, Sep 25, 2024 at 4:45 PM Anne Schilling >> >> <anne1.s...@gmail.com> wrote: >> >> > >> >> > Hi Dima and Kwankyu, >> >> > >> >> > Thank you so much for your help! >> >> > >> >> > Dima, I have >> >> > >> >> > export PATH=$PATH:/Users/anne/Library/ >> >> > >> >> > in my .bashrc file. But when I take out this line the command >> >> > >> >> > ./bootstrap >> >> > >> >> > gives a failure >> >> > >> >> > ... >> >> > /bootstrap:85: installing src/doc/en/reference/spkg/*.rst >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_environment/src/pyproject.toml >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_environment/src/requirements-editable.txt >> >> >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_environment/src/requirements.txt >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_mcqd/src/pyproject.toml >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_mcqd/src/requirements.txt >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_meataxe/src/pyproject.toml >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_meataxe/src/requirements.txt >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_objects/src/pyproject.toml >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_objects/src/requirements-editable.txt >> >> >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_objects/src/requirements.txt >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_repl/src/pyproject.toml >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_repl/src/requirements-editable.txt >> >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_repl/src/requirements.txt >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_sirocco/src/pyproject.toml >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_sirocco/src/requirements.txt >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_tdlib/src/pyproject.toml >> >> > ./bootstrap: installing >> /Users/anne/sage/sage/build/pkgs/sagemath_tdlib/src/requirements.txt >> >> > ./bootstrap-conda:84: generate conda environment files >> >> > ./bootstrap: line 143: aclocal: command not found >> >> > Bootstrap failed. Either install autotools; or run bootstrap with >> >> > the -d option to download the auto-generated files instead. >> >> > >> >> > hint: On your system (homebrew), you can install the required system >> packages as follows: >> >> > $ brew install autoconf automake libtool pkg-config >> >> > >> >> > Homebrew can issue suggestions regarding keg-only packages. >> >> > The following command is to automatically apply these suggestions >> >> > for packages relevant for Sage to make them available for the build. >> >> > Run it once to apply the suggestions for the current session. >> >> > Add it to your shell profile to apply them for all future sessions. >> >> > >> >> > $ source /Users/anne/sage/sage/.homebrew-build-env >> >> > >> >> > Best wishes, >> >> > >> >> > Anne >> >> > >> >> > On Wednesday, September 25, 2024 at 1:00:48 AM UTC-7 >> dim...@gmail.com wrote: >> >> >> >> >> >> these PATH entries look very suspect. >> >> >> You don't want any of these Python things in your PATH. >> >> >> >> >> >> PATH: /Library/Frameworks/Python.framework/Versions/3.7/bin/ >> >> >> PATH: /Library/Frameworks/Python.framework/Versions/2.7/bin/ >> >> >> PATH: /Library/Frameworks/Python.framework/Versions/Current/bin/ >> >> >> >> >> >> On Tue, Sep 24, 2024 at 11:32 PM Anne Schilling >> >> >> <anne1.s...@gmail.com> wrote: >> >> >> > >> >> >> > Ok, sorry, here is the result after >> >> >> > >> >> >> > make distclean >> >> >> > source .homebrew-build-env >> >> >> > ./bootstrap >> >> >> > ./configure --enable-system-site-packages >> >> >> > >> >> >> > Best wishes, >> >> >> > >> >> >> > Anne >> >> >> > >> >> >> > On Tuesday, September 24, 2024 at 3:22:06 PM UTC-7 John H >> Palmieri wrote: >> >> >> >> >> >> >> >> On Tuesday, September 24, 2024 at 3:19:07 PM UTC-7 >> dim...@gmail.com wrote: >> >> >> >> >> >> >> >> From the log: >> >> >> >> >> >> >> >> ./configure --enable-system-site-packagesls (SIC!) >> >> >> >> >> >> >> >> >> >> >> >> ## Checking whether SageMath should install SPKG scipy... ## >> >> >> >> ## ------------------------------------------------------ ## >> >> >> >> configure:90867: checking whether any of openblas is installed >> as or >> >> >> >> will be installed as SPKG >> >> >> >> configure:90877: result: no >> >> >> >> configure:90881: checking if --enable-system-site-packages was >> used >> >> >> >> configure:90939: result: no; skipping check >> >> >> >> configure:90976: no suitable system package found for SPKG scipy >> >> >> >> >> >> >> >> So please run >> >> >> >> >> >> >> >> ./configure --enable-system-site-packages >> >> >> >> >> >> >> >> without a typo. >> >> >> >> >> >> >> >> >> >> >> >> And it might not hurt to first run "make distclean" before doing >> everything else (in case you're not already doing this). >> >> >> >> >> >> >> >> -- >> >> >> >> John >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> > >> >> >> > -- >> >> >> > You received this message because you are subscribed to the >> Google Groups "sage-devel" group. >> >> >> > To unsubscribe from this group and stop receiving emails from it, >> send an email to sage-devel+...@googlegroups.com. >> >> >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-devel/51990537-59a2-4fce-9993-b322ada6c10fn%40googlegroups.com. >> >> >> >> > >> >> > -- >> >> > You received this message because you are subscribed to the Google >> Groups "sage-devel" group. >> >> > To unsubscribe from this group and stop receiving emails from it, >> send an email to sage-devel+...@googlegroups.com. >> >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-devel/da1e14fb-20a7-4e34-bc63-19016b03f588n%40googlegroups.com. >> >> >> > >> > -- >> > You received this message because you are subscribed to the Google >> Groups "sage-devel" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> an email to sage-devel+...@googlegroups.com. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-devel/fdbca53b-c231-496f-a2d5-36d5062a33ecn%40googlegroups.com. >> >> >> > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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