Hello,

I'm trying to use the function maxlik.betasplit from the apTreeshape package in 
some phylogenetic trees. I previously converted the trees to the treeshape 
format and removed polytomies.
However, each time I run the command, I get several warnings, usually more than 
50, all with the same text:







49: In if
(class(phylo) == "treeshape") bal <- bbalance(as.phylo(phylo)) :

  the condition has length > 1 and only the
first element will be used


50: In if
(class(phylo) == "phylo") bal <- bbalance(phylo) :

  the condition has length > 1 and only the
first element will be used
Despite getting the results I need, I'm not sure what these warnings mean and 
so don't really trust the data I'm getting. Is it something I can ignore?
Thanks in advance!Pedro


                                          
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