Hi Pedro,
It's an issue in the design of the package. The condition tests should
be something like:
if (inherits(phylo, "treeshape")) ....
if (inherits(phylo, "phylo")) ....
But if the output makes sense, you should not worry about it since,
apparently, this is just to transform the tree in the appropriate class.
Best,
Emmanuel
Le 01/02/2016 18:15, Pedro Neves a écrit :
Hello,
I'm trying to use the function maxlik.betasplit from the apTreeshape package in
some phylogenetic trees. I previously converted the trees to the treeshape
format and removed polytomies.
However, each time I run the command, I get several warnings, usually more than
50, all with the same text:
49: In if
(class(phylo) == "treeshape") bal <- bbalance(as.phylo(phylo)) :
the condition has length > 1 and only the
first element will be used
50: In if
(class(phylo) == "phylo") bal <- bbalance(phylo) :
the condition has length > 1 and only the
first element will be used
Despite getting the results I need, I'm not sure what these warnings mean and
so don't really trust the data I'm getting. Is it something I can ignore?
Thanks in advance!Pedro
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