Roy, I’m interested in how you got it to work. Can you elaborate? What do you
select from where, and how did permissions affect what you see? Thanks, Bryan
> On May 1, 2017, at 1:51 PM, Roy Mendelssohn - NOAA Federal
> <roy.mendelss...@noaa.gov> wrote:
>
> Ignore the previous email. I was having permission problems, got it to work.
>
> -Roy
>
>> On May 1, 2017, at 9:15 AM, Roy Mendelssohn - NOAA Federal
>> <roy.mendelss...@noaa.gov> wrote:
>>
>> I am not getting this. In the drop down box where it usually defaults to
>> CRAN (binaries) what do I select. I tried pasting in exactly what u=you
>> said and don't get anything back.
>>
>> Thanks for any help.
>>
>> -Roy
>>
>>
>>> On Apr 23, 2017, at 5:16 PM, Simon Urbanek <simon.urba...@r-project.org>
>>> wrote:
>>>
>>> Note that if you use R.app and standard locations you can simply select
>>> "Select packages from R 3.3" in the package installer search box and hit
>>> Install Selected.
>>>
>>> Cheers,
>>> Simon
>>>
>>>
>>>
>>>> On Apr 23, 2017, at 10:47 AM, Roy Mendelssohn - NOAA Federal
>>>> <roy.mendelss...@noaa.gov> wrote:
>>>>
>>>> Thanks to all, particularly the script to aid in the update. In the past
>>>> when I just copied, I had problems with some packages.
>>>>
>>>> -Roy
>>>>
>>>>> On Apr 23, 2017, at 7:09 AM, Prof Brian Ripley <rip...@stats.ox.ac.uk>
>>>>> wrote:
>>>>>
>>>>> Note that at the moment there are many missing binary packages for 3.4.0,
>>>>> and BioC will update all their versions when BioC 3.5 is released this
>>>>> coming week. So I would wait a few days before updating, especially if
>>>>> you prefer to use binary packages.
>>>>>
>>>>>> nrow(available.packages(, type="source"))
>>>>> [1] 10477
>>>>>> nrow(available.packages(, type="binary"))
>>>>> [1] 9779
>>>>>
>>>>> whereas for 3.3.3 10356 are available.
>>>>>
>>>>> On 23/04/2017 09:35, peter dalgaard wrote:
>>>>>> Yes, especially this time, since the toolchain has been updated.
>>>>>> My favourite procedure for this goes like
>>>>>> (pkgs <- .libPaths())
>>>>>> (pkgs.old <- sub("3.4", "3.3", pkgs, fixed=TRUE))
>>>>>> (pkgs.new <- setdiff(list.files(pkgs.old), list.files(pkgs)))
>>>>>> Check for sanity(!), then install.packages(pkgs.new). Things may need
>>>>>> modification if yor setup involves personalized libraries, multiple
>>>>>> repos, etc.
>>>>>> Just copying the entire directory followed by
>>>>>> update.packages(checkBuilt=TRUE) will overwrite packages from the
>>>>>> installation of 3.4 and not all of those are CRAN based.
>>>>>> [To tell the truth, I don't usually practice what I preach. I just
>>>>>> install the missing packages when it turns out that I need them...]
>>>>>> -pd
>>>>>>> On 23 Apr 2017, at 05:49 , Roy Mendelssohn - NOAA Federal
>>>>>>> <roy.mendelss...@noaa.gov> wrote:
>>>>>>>
>>>>>>> I keep forgetting. So if I jump from R3.3.3 to R3.4.0 is it necessary
>>>>>>> (or at least advisable) to re-install packages?
>>>>>>>
>>>>>>> Thanks,
>>>>>>>
>>>>>>> -Roy
>>>>>
>>>>>
>>>>> --
>>>>> Brian D. Ripley, rip...@stats.ox.ac.uk
>>>>> Emeritus Professor of Applied Statistics, University of Oxford
>>>>
>>>> **********************
>>>> "The contents of this message do not reflect any position of the U.S.
>>>> Government or NOAA."
>>>> **********************
>>>> Roy Mendelssohn
>>>> Supervisory Operations Research Analyst
>>>> NOAA/NMFS
>>>> Environmental Research Division
>>>> Southwest Fisheries Science Center
>>>> ***Note new street address***
>>>> 110 McAllister Way
>>>> Santa Cruz, CA 95060
>>>> Phone: (831)-420-3666
>>>> Fax: (831) 420-3980
>>>> e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/
>>>>
>>>> "Old age and treachery will overcome youth and skill."
>>>> "From those who have been given much, much will be expected"
>>>> "the arc of the moral universe is long, but it bends toward justice" -MLK
>>>> Jr.
>>>>
>>>> _______________________________________________
>>>> R-SIG-Mac mailing list
>>>> R-SIG-Mac@r-project.org
>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>
>>>
>>
>> **********************
>> "The contents of this message do not reflect any position of the U.S.
>> Government or NOAA."
>> **********************
>> Roy Mendelssohn
>> Supervisory Operations Research Analyst
>> NOAA/NMFS
>> Environmental Research Division
>> Southwest Fisheries Science Center
>> ***Note new street address***
>> 110 McAllister Way
>> Santa Cruz, CA 95060
>> Phone: (831)-420-3666
>> Fax: (831) 420-3980
>> e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/
>>
>> "Old age and treachery will overcome youth and skill."
>> "From those who have been given much, much will be expected"
>> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
>>
>
> **********************
> "The contents of this message do not reflect any position of the U.S.
> Government or NOAA."
> **********************
> Roy Mendelssohn
> Supervisory Operations Research Analyst
> NOAA/NMFS
> Environmental Research Division
> Southwest Fisheries Science Center
> ***Note new street address***
> 110 McAllister Way
> Santa Cruz, CA 95060
> Phone: (831)-420-3666
> Fax: (831) 420-3980
> e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/
>
> "Old age and treachery will overcome youth and skill."
> "From those who have been given much, much will be expected"
> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
>
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
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