Note that if you use R.app and standard locations you can simply select "Select
packages from R 3.3" in the package installer search box and hit Install
Selected.
Cheers,
Simon
> On Apr 23, 2017, at 10:47 AM, Roy Mendelssohn - NOAA Federal
> <roy.mendelss...@noaa.gov> wrote:
>
> Thanks to all, particularly the script to aid in the update. In the past
> when I just copied, I had problems with some packages.
>
> -Roy
>
>> On Apr 23, 2017, at 7:09 AM, Prof Brian Ripley <rip...@stats.ox.ac.uk> wrote:
>>
>> Note that at the moment there are many missing binary packages for 3.4.0,
>> and BioC will update all their versions when BioC 3.5 is released this
>> coming week. So I would wait a few days before updating, especially if you
>> prefer to use binary packages.
>>
>>> nrow(available.packages(, type="source"))
>> [1] 10477
>>> nrow(available.packages(, type="binary"))
>> [1] 9779
>>
>> whereas for 3.3.3 10356 are available.
>>
>> On 23/04/2017 09:35, peter dalgaard wrote:
>>> Yes, especially this time, since the toolchain has been updated.
>>> My favourite procedure for this goes like
>>> (pkgs <- .libPaths())
>>> (pkgs.old <- sub("3.4", "3.3", pkgs, fixed=TRUE))
>>> (pkgs.new <- setdiff(list.files(pkgs.old), list.files(pkgs)))
>>> Check for sanity(!), then install.packages(pkgs.new). Things may need
>>> modification if yor setup involves personalized libraries, multiple repos,
>>> etc.
>>> Just copying the entire directory followed by
>>> update.packages(checkBuilt=TRUE) will overwrite packages from the
>>> installation of 3.4 and not all of those are CRAN based.
>>> [To tell the truth, I don't usually practice what I preach. I just install
>>> the missing packages when it turns out that I need them...]
>>> -pd
>>>> On 23 Apr 2017, at 05:49 , Roy Mendelssohn - NOAA Federal
>>>> <roy.mendelss...@noaa.gov> wrote:
>>>>
>>>> I keep forgetting. So if I jump from R3.3.3 to R3.4.0 is it necessary (or
>>>> at least advisable) to re-install packages?
>>>>
>>>> Thanks,
>>>>
>>>> -Roy
>>
>>
>> --
>> Brian D. Ripley, rip...@stats.ox.ac.uk
>> Emeritus Professor of Applied Statistics, University of Oxford
>
> **********************
> "The contents of this message do not reflect any position of the U.S.
> Government or NOAA."
> **********************
> Roy Mendelssohn
> Supervisory Operations Research Analyst
> NOAA/NMFS
> Environmental Research Division
> Southwest Fisheries Science Center
> ***Note new street address***
> 110 McAllister Way
> Santa Cruz, CA 95060
> Phone: (831)-420-3666
> Fax: (831) 420-3980
> e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/
>
> "Old age and treachery will overcome youth and skill."
> "From those who have been given much, much will be expected"
> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
>
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