Missed that one, Simon. Usually I go straight for the Terminal or the Rstudio
embedding. Do we have a command line variant of this already?
-pd
> On 24 Apr 2017, at 02:16 , Simon Urbanek <simon.urba...@r-project.org> wrote:
>
> Note that if you use R.app and standard locations you can simply select
> "Select packages from R 3.3" in the package installer search box and hit
> Install Selected.
>
> Cheers,
> Simon
>
>
>
>> On Apr 23, 2017, at 10:47 AM, Roy Mendelssohn - NOAA Federal
>> <roy.mendelss...@noaa.gov> wrote:
>>
>> Thanks to all, particularly the script to aid in the update. In the past
>> when I just copied, I had problems with some packages.
>>
>> -Roy
>>
>>> On Apr 23, 2017, at 7:09 AM, Prof Brian Ripley <rip...@stats.ox.ac.uk>
>>> wrote:
>>>
>>> Note that at the moment there are many missing binary packages for 3.4.0,
>>> and BioC will update all their versions when BioC 3.5 is released this
>>> coming week. So I would wait a few days before updating, especially if you
>>> prefer to use binary packages.
>>>
>>>> nrow(available.packages(, type="source"))
>>> [1] 10477
>>>> nrow(available.packages(, type="binary"))
>>> [1] 9779
>>>
>>> whereas for 3.3.3 10356 are available.
>>>
>>> On 23/04/2017 09:35, peter dalgaard wrote:
>>>> Yes, especially this time, since the toolchain has been updated.
>>>> My favourite procedure for this goes like
>>>> (pkgs <- .libPaths())
>>>> (pkgs.old <- sub("3.4", "3.3", pkgs, fixed=TRUE))
>>>> (pkgs.new <- setdiff(list.files(pkgs.old), list.files(pkgs)))
>>>> Check for sanity(!), then install.packages(pkgs.new). Things may need
>>>> modification if yor setup involves personalized libraries, multiple repos,
>>>> etc.
>>>> Just copying the entire directory followed by
>>>> update.packages(checkBuilt=TRUE) will overwrite packages from the
>>>> installation of 3.4 and not all of those are CRAN based.
>>>> [To tell the truth, I don't usually practice what I preach. I just install
>>>> the missing packages when it turns out that I need them...]
>>>> -pd
>>>>> On 23 Apr 2017, at 05:49 , Roy Mendelssohn - NOAA Federal
>>>>> <roy.mendelss...@noaa.gov> wrote:
>>>>>
>>>>> I keep forgetting. So if I jump from R3.3.3 to R3.4.0 is it necessary
>>>>> (or at least advisable) to re-install packages?
>>>>>
>>>>> Thanks,
>>>>>
>>>>> -Roy
>>>
>>>
>>> --
>>> Brian D. Ripley, rip...@stats.ox.ac.uk
>>> Emeritus Professor of Applied Statistics, University of Oxford
>>
>> **********************
>> "The contents of this message do not reflect any position of the U.S.
>> Government or NOAA."
>> **********************
>> Roy Mendelssohn
>> Supervisory Operations Research Analyst
>> NOAA/NMFS
>> Environmental Research Division
>> Southwest Fisheries Science Center
>> ***Note new street address***
>> 110 McAllister Way
>> Santa Cruz, CA 95060
>> Phone: (831)-420-3666
>> Fax: (831) 420-3980
>> e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/
>>
>> "Old age and treachery will overcome youth and skill."
>> "From those who have been given much, much will be expected"
>> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
>>
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>>
>
> _______________________________________________
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--
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd....@cbs.dk Priv: pda...@gmail.com
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