Hello,
If cat is giving you an error try print(attr <- ...etc...)
Hope this helps,
Rui Barradas
Em 01-11-2017 17:21, Priya Arasu via R-help escreveu:
Hi David,Thank you for the example.When I try to use the cat function, I get an
error
cat(attr<-getAttractors(net, type="asynchronous"))Error in cat(attr <- getAttractors(net,
type = "asynchronous")) :
argument 1 (type 'pairlist') cannot be handled by 'cat'
Please let me know, if I have used the function in right way?.
Thank you
Priya
On Wednesday, 1 November 2017 9:32 PM, David L Carlson <dcarl...@tamu.edu>
wrote:
Let's try a simple example.
# Create a script file of commands
# Note we must print the results of quantile explicitly
cat("x <- rnorm(50)\nprint(quantile(x))\nstem(x)\n", file="Test.R")
# Test it by running it to the console
source("Test.R")
0% 25% 50% 75% 100%
-2.4736219 -0.7915433 -0.1178056 0.7023577 2.9158617
The decimal point is at the |
-2 | 510
-1 | 7631110
-0 | 9988777333333211
0 | 01124455557777889
1 | 00045
2 | 19
# Now run it and save the file
sink("Testout.txt")
source("Test.R")
sink()
# What is located in "Testout.txt"?
cat(readLines("Testout.txt"), sep="\n")
0% 25% 50% 75% 100%
-2.47511893 -0.47919111 0.05761628 0.67403447 1.79825459
The decimal point is at the |
-2 | 5
-2 | 4
-1 |
-1 | 432000
-0 | 87755
-0 | 4433332110
0 | 001244
0 | 55666667777789
1 | 113
1 | 5788
# Success
Depending on your operating system, you may also be able to save the output
with File | Save to File.
---------------------------------------
David L Carlson
Department of Anthropology
Texas A&M University
College Station, TX 77843-4352
-----Original Message-----
From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Priya Arasu via
R-help
Sent: Wednesday, November 1, 2017 9:57 AM
To: Eric Berger <ericjber...@gmail.com>
Cc: r-help@r-project.org
Subject: Re: [R] Function to save results
Hi Eric,Thanks for the explanation. Is there a way to save the results
automatically after the analysis gets over?. As I recently lost the results,
because I didn't save the results. I don't want to run the sink or save command
after the analysis is over rather run the command for saving the file before
starting to run the analysis, so the file gets saved automatically after the
script has finished running Priya
On Wednesday, 1 November 2017 7:53 PM, Eric Berger <ericjber...@gmail.com>
wrote:
Hi Priya,
You did not follow the logic of the pseudo-code. The sink("filename"), sink()
pair captures whatever output is generated between the first sink statement and the
second sink statement.You need (possibly) to do:
sink("C://Users//Priya// Desktop//Attractor analysis_all genes//synaptogenesis//attr. txt") net <-
loadNetwork("C://Users//Priya/ /Desktop//Attractor analysis_all genes//synaptogenesis// regulationof_dopamine_
signaling_submodule3.txt")attr <- getAttractors(net, type="asynchronous")
sink()
HTH,Eric
Hi Eric,I tried as you suggested but I could not find the output in the text
file I created (attr.txt)
net <- loadNetwork("C://Users//Priya/ /Desktop//Attractor analysis_all genes//synaptogenesis//
regulationof_dopamine_ signaling_submodule3.txt")sink("C://Users//Priya// Desktop//Attractor
analysis_all genes//synaptogenesis//attr. txt")
sink()
attr <- getAttractors(net, type="asynchronous")
Priya
On Wednesday, 1 November 2017 6:54 PM, Eric Berger <ericjber...@gmail.com>
wrote:
Some comments:1. sink() does not return a value. There is on point to set attr <- sink(...). Just
give the command sink("C://....etc")2. to complete the saving to the file you must give a
second sink command with no argument: sink()So your code would be (pseudo-code, not actual code)
sink( "filename" )do something that prints output which will be captured by sinksink()
HTH,Eric
On Wed, Nov 1, 2017 at 1:32 PM, Priya Arasu via R-help <r-help@r-project.org>
wrote:
Hi,I want the results to be saved automatically in a output text file after the
script has finished running.
I used the sink function in the following example, but the results file
(output.txt) was empty.
net <- loadNetwork("C://Users//Priya/ /Desktop//Attractor analysis_all genes//synaptogenesis//
regulationof_dopamine_ signaling_submodule3.txt")# First I loaded theinput file for which I want to
identify attractors attr <- sink("C://Users//Priya// Desktop//Attractor analysis_all
genes//synaptogenesis//output. txt")# used the sink function to save the results from attr function
attr <- getAttractors(net, type="asynchronous")# then ran the script for
identifying attractors Is there any function to save the results before setting the script
to run, so that results are automatically saved in a text file after the script has finished
running?
Thank youPriya
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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