Hi Eric,Thanks for the explanation. Is there a way to save the results
automatically after the analysis gets over?. As I recently lost the results,
because I didn't save the results. I don't want to run the sink or save command
after the analysis is over rather run the command for saving the file before
starting to run the analysis, so the file gets saved automatically after the
script has finished running
Priya
On Wednesday, 1 November 2017 7:53 PM, Eric Berger <[email protected]>
wrote:
Hi Priya,
You did not follow the logic of the pseudo-code. The sink("filename"), sink()
pair captures whatever output is generated between the first sink statement and
the second sink statement.You need (possibly) to do:
sink("C://Users//Priya// Desktop//Attractor analysis_all
genes//synaptogenesis//attr. txt")
net <- loadNetwork("C://Users//Priya/ /Desktop//Attractor analysis_all
genes//synaptogenesis// regulationof_dopamine_ signaling_submodule3.txt")attr
<- getAttractors(net, type="asynchronous")
sink()
HTH,Eric
On Wed, Nov 1, 2017 at 4:10 PM, Priya Arasu <[email protected]> wrote:
Hi Eric,I tried as you suggested but I could not find the output in the text
file I created (attr.txt)
net <- loadNetwork("C://Users//Priya/ /Desktop//Attractor analysis_all
genes//synaptogenesis// regulationof_dopamine_
signaling_submodule3.txt")sink("C://Users//Priya// Desktop//Attractor
analysis_all genes//synaptogenesis//attr. txt")
sink()
attr <- getAttractors(net, type="asynchronous")
Priya
On Wednesday, 1 November 2017 6:54 PM, Eric Berger <[email protected]>
wrote:
Some comments:1. sink() does not return a value. There is on point to set attr
<- sink(...). Just give the command sink("C://....etc")2. to complete the
saving to the file you must give a second sink command with no argument:
sink()So your code would be (pseudo-code, not actual code)
sink( "filename" )do something that prints output which will be captured by
sinksink()
HTH,Eric
On Wed, Nov 1, 2017 at 1:32 PM, Priya Arasu via R-help <[email protected]>
wrote:
Hi,I want the results to be saved automatically in a output text file after the
script has finished running.
I used the sink function in the following example, but the results file
(output.txt) was empty.
net <- loadNetwork("C://Users//Priya/ /Desktop//Attractor analysis_all
genes//synaptogenesis// regulationof_dopamine_ signaling_submodule3.txt")#
First I loaded theinput file for which I want to identify attractors
attr <- sink("C://Users//Priya// Desktop//Attractor analysis_all
genes//synaptogenesis//output. txt")# used the sink function to save the
results from attr function
attr <- getAttractors(net, type="asynchronous")# then ran the script for
identifying attractors
Is there any function to save the results before setting the script to run, so
that results are automatically saved in a text file after the script has
finished running?
Thank youPriya
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