Hi Riccardo -
I guess you are asking if "layer1/Ray.c" is the only place you'd have to write
code to implement IDTF export of spheres, cylinders, etc.? Then I believe the
answer is "yes." I'm working on a COLLADA implementation as one of my PyMOL
Open Source Fellowship projects this year, and have been modeling my code's
layout after the function RayRenderVRML2() in that same file.
Cheers,
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
550 First Avenue
New York, NY 10016
212-263-7898
http://kong.med.nyu.edu/
On Feb 10, 2014, at 7:51 PM, Riccardo
<mitm...@gmail.com<mailto:mitm...@gmail.com>>
wrote:
@Jared: Hello! Thanks for you reply! I supposed it... So, must be implemented
yet; is that the only interested file for that exporting function? Thanks a lot.
@Bob: Hello! Nice to hear you here! Thanks.
Yes. So JmolData.jar can read a .pse file as is (with lights, transparences,
hidden no-polar hydrogens, colors, ray, etc)? Sounds good.
Thanks a lot to you.
Regards,
Riccardo Volpe
[http://lh3.googleusercontent.com/-l_W2_-XQUNc/AAAAAAAAAAI/AAAAAAAAAAA/aYl9hZ3l-PU/s30-c/photo.jpg]
ChemBioScripting | X3D PyMOL Molecule Viewer<http://chembioscripting.hol.es/>
| Gioacchino Riccardo Volpe
2014-02-10 23:15 GMT+01:00 Sampson, Jared
<jared.samp...@nyumc.org<mailto:jared.samp...@nyumc.org>>:
Hi Riccardo -
Looking at the source (pymol/layer1/Ray.c, in RayRenderIDTF(), starting around
line 2254) I can confirm that Sphere, Cone, Cylinder and Sausage
representations are not implemented in the IDTF exporter. Currently only
triangle mesh representations (cartoon, surface) are supported.
Hope that answers your question,
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
550 First Avenue
New York, NY 10016
212-263-7898
http://kong.med.nyu.edu/
On Feb 9, 2014, at 12:26 PM, Riccardo
<mitm...@gmail.com<mailto:mitm...@gmail.com>> wrote:
Hello to the PyMOL mailing list,
this is my first post.
I need to ask if there is some reason for which PyMOL fails to export a good
idtf file from a small molecule visualized as sticks. In this case, neither
IDTFConverter nor MeshLab (under Linux and Windows) can convert the file in an
u3d file, because these two programs reject the PyMOL idtf output, reporting an
error.
Different if I export the idtf from Jmol: in this case, the file is dozens of
times bigger in size than PyMOL's output, and the u3d is generated without
errors with sticks representation.
I noticed that, only when the style is set to cartoon (for proteins, not small
molecules), the idtf file is good, but always without any other graphic
representation different from the cartoon. Is this a limit for PyMOL idtf
exporter, for which an implementation is required?
Thanks a lot,
Riccardo Volpe
[X] ChemBioScripting | X3D PyMOL Molecule
Viewer<http://chembioscripting.hol.es/> | Gioacchino Riccardo Volpe
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