Riccardo, like me, I think you forgot to "reply all." (I gather that from
your addressing two of us and not just me.)
Yes, Jmol does that. It's not perfect, but it's a respectable amount of
PyMOL functionality. This is actually something that Warren and I talked
about not too long before his untimely death, and it took a trip last
January for me to the Weizmann Institute to get my head around. See
http://ispcsrv.weizmann.ac.il/a2jmolb/browse It's actually pretty fun to
see PyMOL sessions appear in pure JavaScript!
There will always be aspects of biomolecular visualization that only PyMOL
can reproduce, and that I have no hope of implementing in Jmol, still it's
a good challenge to try, and we feel it fills a need in the area of
interactive web content, at least until Schrodinger comes out with their
own web viewer, which I'm guessing is not far off... (Sorry, that was a
looong sentence!)
I haven't explored JyMOL, but I guess it has the potential to do that, and
like Jmol could probably be converted to JavaScript. I don't know. But I'm
guessing it uses WebGL which isn't an adequate solution in my opinion.
Thomas...?
Bob Hanson
On Mon, Feb 10, 2014 at 6:49 PM, Riccardo <mitm...@gmail.com> wrote:
> @Jared: Hello! Thanks for you reply! I supposed it... So, must be
> implemented yet; is that the only interested file for that exporting
> function? Thanks a lot.
>
> @Bob: Hello! Nice to hear you here! Thanks.
> Yes. So JmolData.jar can read a .pse file as is (with lights,
> transparences, hidden no-polar hydrogens, colors, ray, etc)? Sounds good.
>
> Thanks a lot to you.
>
> Regards,
> Riccardo Volpe
>
>
> *ChemBioScripting | X3D PyMOL Molecule Viewer
> <http://chembioscripting.hol.es> *|* Gioacchino Riccardo Volpe*
>
>
> 2014-02-10 23:25 GMT+01:00 Robert Hanson <hans...@stolaf.edu>:
>
> So in the mean time, Riccardo, I guess what you are already using:
>>
>> xxx.pse -- JmolData.jar --> idtf
>>
>> is your best bet.
>>
>> Q: What sort of size of PDF file are you seeing in the end?
>> Q: Do you see this a practical and useful in some way? If so, in what
>> way?
>>
>> Bob Hanson
>>
>>
>>
>>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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