Sorry, I meant 3D pdf (Adoobie portable document format). But what you are doing sounds pretty cool. Please announce it when you are ready
Tsjerk Wassenaar wrote: > Hi William, > > In contrast to Nick, I read your question as inquiring after a 3D > probability density function. In case I get it wrong, just ignore this > mail. > It is well possible to generate 3D pdfs and display them in Pymol. > Actually, for one project I'm doing that right now. I have modified a > program from the Gromacs package to generate xplor density maps of > relative occupancies in space. Something similar may be of use to you. > If you want, I can send you the program, or a script which does a > similar thing. Alternatively, I can just send the routine to write an > xplor map, given a 3D array (C code, though maybe I already have it in > python too). > > Hope it helps, > > Tsjerk > > On 5/21/07, William Scott <wgsc...@chemistry.ucsc.edu> wrote: >> Is it possible to create a 3D pdf using pymol? >> >> >> William G. Scott >> >> Contact info: >> http://chemistry.ucsc.edu/~wgscott/ >> >> >> >> ------------------------------------------------------------------------- >> This SF.net email is sponsored by DB2 Express >> Download DB2 Express C - the FREE version of DB2 express and take >> control of your XML. No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> PyMOL-users mailing list >> PyMOL-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/pymol-users >> > > > -- > Tsjerk A. Wassenaar, Ph.D. > Junior UD (post-doc) > Biomolecular NMR, Bijvoet Center > Utrecht University > Padualaan 8 > 3584 CH Utrecht > The Netherlands > P: +31-30-2539931 > F: +31-30-2537623 >
