Hi William, In contrast to Nick, I read your question as inquiring after a 3D probability density function. In case I get it wrong, just ignore this mail. It is well possible to generate 3D pdfs and display them in Pymol. Actually, for one project I'm doing that right now. I have modified a program from the Gromacs package to generate xplor density maps of relative occupancies in space. Something similar may be of use to you. If you want, I can send you the program, or a script which does a similar thing. Alternatively, I can just send the routine to write an xplor map, given a 3D array (C code, though maybe I already have it in python too).
Hope it helps, Tsjerk On 5/21/07, William Scott <wgsc...@chemistry.ucsc.edu> wrote:
Is it possible to create a 3D pdf using pymol? William G. Scott Contact info: http://chemistry.ucsc.edu/~wgscott/ ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
-- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623
