Thanks Noel, it works well.Also i was interested in generating svg without background. I haven't found any doc about it so i modified the svg text by replacing fill="white" (or black) by fill="none" in the line :
|'<rect x="0" y="0" width="100" height="100" fill="white"/>'| Although it is not elegant, it works. Hope it will help others. Le 14/04/2013 15:39, Noel O'Boyle a écrit :
-xd is conv.AddOption("d", c.OUTOPTIONS) -d is molecule.OBMol.DeleteHydrogens() (or mol.removeh()) We should document this, to make it easier to translate from obabel options to code. - Noel On 12 April 2013 15:32, Quentin Delettre <quentin.delet...@gmail.com> wrote:Hi, I would like to generate svg for a molecule, inside a python script. I use this code ... c = ob.OBConversion() c.SetOutFormat("svg") c.AddOption("d", c.OUTOPTIONS, "1") c.WriteFile(molecule.OBMol,"molecule.svg") but can't find the way to obtain the molecule with implicit hydrogens like the command : obabel -i sdf molecule.sdf -o svg -O molecule.svg -xC -xd -d Can you help me ? Thanks
------------------------------------------------------------------------------ Precog is a next-generation analytics platform capable of advanced analytics on semi-structured data. The platform includes APIs for building apps and a phenomenal toolset for data science. Developers can use our toolset for easy data analysis & visualization. Get a free account! http://www2.precog.com/precogplatform/slashdotnewsletter
_______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
