-xd is conv.AddOption("d", c.OUTOPTIONS) -d is molecule.OBMol.DeleteHydrogens() (or mol.removeh())
We should document this, to make it easier to translate from obabel options to code. - Noel On 12 April 2013 15:32, Quentin Delettre <quentin.delet...@gmail.com> wrote: > Hi, > > I would like to generate svg for a molecule, inside a python script. > > I use this code > > ... > c = ob.OBConversion() > c.SetOutFormat("svg") > c.AddOption("d", c.OUTOPTIONS, "1") > c.WriteFile(molecule.OBMol,"molecule.svg") > > but can't find the way to obtain the molecule with implicit hydrogens like > the command : > > obabel -i sdf molecule.sdf -o svg -O molecule.svg -xC -xd -d > > > Can you help me ? > > Thanks > > ------------------------------------------------------------------------------ > Precog is a next-generation analytics platform capable of advanced > analytics on semi-structured data. The platform includes APIs for building > apps and a phenomenal toolset for data science. Developers can use > our toolset for easy data analysis & visualization. Get a free account! > http://www2.precog.com/precogplatform/slashdotnewsletter > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss > ------------------------------------------------------------------------------ Precog is a next-generation analytics platform capable of advanced analytics on semi-structured data. The platform includes APIs for building apps and a phenomenal toolset for data science. Developers can use our toolset for easy data analysis & visualization. Get a free account! http://www2.precog.com/precogplatform/slashdotnewsletter _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss