On 01/22/2013 06:02 PM, Christoph Junghans wrote:
Message: 5
Date: Tue, 22 Jan 2013 19:42:01 +0100
From: Szil?rd P?ll<szilard.p...@cbr.su.se>
Subject: Re: [gmx-users] Problem with gromacs-4.6 compilation on
         Debian
To: Discussion list for GROMACS users<gmx-users@gromacs.org>
Message-ID:
         <CANnYEw5=t=25hnZPfHpdJot7=3yncu1aegv7hcac3mut_75...@mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1

On Tue, Jan 22, 2013 at 12:45 PM, James Starlight<jmsstarli...@gmail.com>wrote:

Szilárd,

Today I've tried to re-install cuda+gromacs and do apt-get
distr-upgrade but the same error was obtained during gromacs

I'm don't see how does the distribution upgrade relate to the issues you
had (except if you have updated glibs to a newer version which is *still*
incompatible with libcuda. You should probably try getting a more recent
glibc and GCC version, one that libcuda is linked against. However, I'm not
sure what the source of your problem is, so I can't suggest a certain
solution.
I had a similar problem on Gentoo Linux
(https://bugs.gentoo.org/show_bug.cgi?id=452386), it helped to use a
newer version of gcc (>=4.6).

Cheers,

Christoph



I also had this problem, and found that (manually) updating GCC to version 4.6 or higher has fully solved some installation issues with GROMACS 4.6. Please note that, for older linux dists, updating via console 'apt-get update' does not assure that you'd get newer versions of GCC, therefore, in this case, it should be downloaded and installed manually.

Cheers

compilation. By the way where I could provide --add-needed option ?
CMAKE_EXE_LINKER_FLAGS=-wl,--add-needed

Cheers,
Szilárd



James


2013/1/21 Szilárd Páll<szilard.p...@cbr.su.se>:
Szilárd
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Christoph Junghans
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Ricardo O S Soares
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