On 01/22/2013 06:02 PM, Christoph Junghans wrote:
Message: 5
Date: Tue, 22 Jan 2013 19:42:01 +0100
From: Szil?rd P?ll<szilard.p...@cbr.su.se>
Subject: Re: [gmx-users] Problem with gromacs-4.6 compilation on
Debian
To: Discussion list for GROMACS users<gmx-users@gromacs.org>
Message-ID:
<CANnYEw5=t=25hnZPfHpdJot7=3yncu1aegv7hcac3mut_75...@mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1
On Tue, Jan 22, 2013 at 12:45 PM, James Starlight<jmsstarli...@gmail.com>wrote:
Szilárd,
Today I've tried to re-install cuda+gromacs and do apt-get
distr-upgrade but the same error was obtained during gromacs
I'm don't see how does the distribution upgrade relate to the issues you
had (except if you have updated glibs to a newer version which is *still*
incompatible with libcuda. You should probably try getting a more recent
glibc and GCC version, one that libcuda is linked against. However, I'm not
sure what the source of your problem is, so I can't suggest a certain
solution.
I had a similar problem on Gentoo Linux
(https://bugs.gentoo.org/show_bug.cgi?id=452386), it helped to use a
newer version of gcc (>=4.6).
Cheers,
Christoph
I also had this problem, and found that (manually) updating GCC to
version 4.6 or higher has fully solved some installation issues with
GROMACS 4.6. Please note that, for older linux dists, updating via
console 'apt-get update' does not assure that you'd get newer versions
of GCC, therefore, in this case, it should be downloaded and installed
manually.
Cheers
compilation. By the way where I could provide --add-needed option ?
CMAKE_EXE_LINKER_FLAGS=-wl,--add-needed
Cheers,
Szilárd
James
2013/1/21 Szilárd Páll<szilard.p...@cbr.su.se>:
Szilárd
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
--
Christoph Junghans
Web: http://www.compphys.de
Ricardo O S Soares
http://fisbio.fcfrp.usp.br/joomla/
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
