Hi Bharat, That simulation have been done in charmm program so the convertion from charmm to gromacs would be more routinely for me.
James 2012/12/5 bharat gupta <bharat.85.m...@gmail.com>: > Hi, > > You can refer this paper for the topology > http://pubs.acs.org/doi/abs/10.1021/jp014476w. > > ----------- > BHARAT > > On Wed, Dec 5, 2012 at 10:14 PM, James Starlight > <jmsstarli...@gmail.com>wrote: > >> Dear Gromacs Users! >> >> >> I'm looking for the model as well as for the pre-paired topology for >> any kind of GFP protein with the chromophore group covaletnly bonded >> in the interiour of that protein. >> >> Some times ago I've tried to make such models by hands but I've forced >> with some difficulties with the integration of the chromophore group >> to the existing GROMOS force field parameter files. In that case I had >> .itp for the chromophore group made by PRODRG which I've failed to >> convert to the rtp and integrate to other files in accordance to the >> >> http://www.gromacs.org/Documentation/How-tos/Adding_a_Residue_to_a_Force_Field >> >> So I'll be very thankfull if any could provide me with such model as >> well as suitable topology which I could use as the example for >> preparation of my future models :) >> >> >> Thanks for help >> >> James >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to gmx-users-requ...@gromacs.org. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
