Hi, You can refer this paper for the topology http://pubs.acs.org/doi/abs/10.1021/jp014476w.
----------- BHARAT On Wed, Dec 5, 2012 at 10:14 PM, James Starlight <jmsstarli...@gmail.com>wrote: > Dear Gromacs Users! > > > I'm looking for the model as well as for the pre-paired topology for > any kind of GFP protein with the chromophore group covaletnly bonded > in the interiour of that protein. > > Some times ago I've tried to make such models by hands but I've forced > with some difficulties with the integration of the chromophore group > to the existing GROMOS force field parameter files. In that case I had > .itp for the chromophore group made by PRODRG which I've failed to > convert to the rtp and integrate to other files in accordance to the > > http://www.gromacs.org/Documentation/How-tos/Adding_a_Residue_to_a_Force_Field > > So I'll be very thankfull if any could provide me with such model as > well as suitable topology which I could use as the example for > preparation of my future models :) > > > Thanks for help > > James > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
