Dear Justin sir,
I am simulating a protein 1AKI.pdb which is example of
your tutorial.I am doing simulations as your tutorial.I didnt get any
errors upto the commond "grompp -f minim.mdp -c 1AKI_solv_ions.gro -p
topol.top -o em.tpr".After this as your tutorial i used the commond " mdrun
-v -deffnm em", then i got the following error.
Fatal error:
Domain decomposition does not support simple neighbor searching, use grid
searching or use particle decomposition
Kindly tell me how to overcome this error.
Suryanarayana Seera,
JRF,
India.
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