On 5/04/2012 5:16 PM, bharat gupta wrote:
/This is the output :
[root@BHARATPC ~]# /usr/local/bin/dssp
/
Don't run as root except for installing software, unless you like
rebuilding your computer from the ground up.
/bash: /usr/local/bin/dssp: Permission denied
/
Possibly you didn't give execute permission on some file or other. This
is not a GROMACS problem, but rather a problem with how you have done
your dssp installation. Consult its documentation.
/
I have already set the pat for dssp in .bashrc using export command ,
I don't know why this error is there. Is it due to renaming dsspcmbi
to dssp ??
/
You have now reported testing a command different from the one you
reported that you had instructed do_dssp to use. So it is hard for me to
believe your assertion that you are following the advice in do_dssp -h
correctly with a correct version of DSSP.
Mark
//
On Thu, Apr 5, 2012 at 4:08 PM, Mark Abraham <mark.abra...@anu.edu.au
<mailto:mark.abra...@anu.edu.au>> wrote:
On 5/04/2012 4:16 PM, bharat gupta wrote:
Yes , I am using the correct options for dssp. But still I am
getting the same error.
What does invoking /usr/local/bin/dsspcmbi say?
Mark
On Thu, Apr 5, 2012 at 2:12 PM, Mark Abraham
<mark.abra...@anu.edu.au <mailto:mark.abra...@anu.edu.au>> wrote:
On 5/04/2012 10:25 AM, bharat gupta wrote:
Hi,
I am trying to plot the ss content using the do_dssp
command , but I am getting the following error :-
Failed to execute command: /usr/local/bin/dsspcmbi -na
ddldj5Bn ddXN9mH0 > /dev/null 2> /dev/null
I am using the DSSPold version. What could be the
possible reason for such an error ??
Many of them. Start by making sure you're following the
advice of do_dssp -h.
Mark
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--
Bharat
Ph.D. Candidate
Room No. : 7202A, 2nd Floor
Biomolecular Engineering Laboratory
Division of Chemical Engineering and Polymer Science
Pusan National University
Busan -609735
South Korea
Lab phone no. - +82-51-510-3680, +82-51-583-8343
Mobile no. - 010-5818-3680
E-mail : monu46...@yahoo.com <mailto:monu46...@yahoo.com>
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