*This is the output : [root@BHARATPC ~]# /usr/local/bin/dssp bash: /usr/local/bin/dssp: Permission denied
I have already set the pat for dssp in .bashrc using export command , I don't know why this error is there. Is it due to renaming dsspcmbi to dssp ?? * On Thu, Apr 5, 2012 at 4:08 PM, Mark Abraham <mark.abra...@anu.edu.au>wrote: > On 5/04/2012 4:16 PM, bharat gupta wrote: > > Yes , I am using the correct options for dssp. But still I am getting the > same error. > > > What does invoking /usr/local/bin/dsspcmbi say? > > Mark > > > > On Thu, Apr 5, 2012 at 2:12 PM, Mark Abraham <mark.abra...@anu.edu.au>wrote: > >> On 5/04/2012 10:25 AM, bharat gupta wrote: >> >>> Hi, >>> >>> I am trying to plot the ss content using the do_dssp command , but I am >>> getting the following error :- >>> >>> Failed to execute command: /usr/local/bin/dsspcmbi -na ddldj5Bn ddXN9mH0 >>> > /dev/null 2> /dev/null >>> >>> I am using the DSSPold version. What could be the possible reason for >>> such an error ?? >>> >> >> Many of them. Start by making sure you're following the advice of >> do_dssp -h. >> >> Mark >> >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to gmx-users-requ...@gromacs.org. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > > > -- > Bharat > Ph.D. Candidate > Room No. : 7202A, 2nd Floor > Biomolecular Engineering Laboratory > Division of Chemical Engineering and Polymer Science > Pusan National University > Busan -609735 > South Korea > Lab phone no. - +82-51-510-3680, +82-51-583-8343 > Mobile no. - 010-5818-3680 > E-mail : monu46...@yahoo.com > > > > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Bharat Ph.D. Candidate Room No. : 7202A, 2nd Floor Biomolecular Engineering Laboratory Division of Chemical Engineering and Polymer Science Pusan National University Busan -609735 South Korea Lab phone no. - +82-51-510-3680, +82-51-583-8343 Mobile no. - 010-5818-3680 E-mail : monu46...@yahoo.com
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