shahab shariati wrote:
Dear Justin
thanks for your time and attention
in address
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/index.html
in Tutorial 3: Umbrella Sampling
<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/umbrella/index.html>,
in Step One, you said '' For protein-ligand systems, please consult this
tutorial
<http://eugen.leitl.org/chem/kerrigje/pdf_files/trp_drug_tutor.pdf> ''.
unfortunately, I can't access that (when clicked on link: Apologies, but
the page you requested could not be found).
how to access to that link?
The page must have moved. Please refer to
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/complex/index.html
instead.
I have another question about my system (protein-dna complex). If I do a
mutation in protein, can I obtain delta delta G by PMF method again?
I would suggest you consult my paper that is associated with the umbrella
sampling tutorial.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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