shahab shariati wrote:
Dear Justin and Mohsen
Very thanks for your attention
Justin you said PMF is much easier in my case (protein-dna complex).
Is there tutorial or example about using PMF method in gromacs to
obtain free binding energy? If so, please address me.
If the question starts with "Is there a tutorial for..." then the answer is
always:
http://www.gromacs.org/Documentation/Tutorials
I suspect you'll find something useful there :)
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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