On 11/05/10 05:17, sonali dhindwal wrote:
Thanks a lot for your replies. I will start reading this and learning MD.
I really want to say that this forum is an excellent source of help.
Thanks for all your help.
Another book you may want to read is "Understanding molecular
simulation", by Daan Frenkel and Berend Smit. It also covers issues not
related strictly to molecular dynamics, like MonteCarlo techniques, but
it is a very good resource.
m.
Regards
--
Sonali Dhindwal
--- On Mon, 10/5/10, Justin A. Lemkul<jalem...@vt.edu> wrote:
From: Justin A. Lemkul<jalem...@vt.edu>
Subject: Re: [gmx-users] Learning MD
To: "Discussion list for GROMACS users"<gmx-users@gromacs.org>
Date: Monday, 10 May, 2010, 10:43 PM
sonali dhindwal wrote:
Hello All,
I am new at MD, and i have started doing it few months ago only. I tried to run
some simulations but taking all the parameters using some tutorials given
online and have not got very good results.
Can someone please help in suggesting what is the best way to learn MD using
Gromacs in terms of manuals and literature, what should be referred to do a
start ?
I am sorry in advance if this query irritates someone, but any kind of help
will be highly appreciable.
The Gromacs manual is a fantastic resource, particularly the introductory
chapters.
Beyond that, have you tried Google? There are a number of great
introductory-type pages that discuss some of the more basic aspects of MD. You
might also find some help here:
http://en.wikipedia.org/wiki/Molecular_dynamics#References
I can attest to several of the books listed there (Allen& Tildesley, Leach,
and Schlick) being particularly useful. Beyond that, hopefully a supervisor or
colleagues will have some expertise and can recommend the requisite reading
material.
-Justin
Regards
--
Sonali Dhindwal
-- ========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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