Thanks a lot for your replies. I will start reading this and learning MD. I really want to say that this forum is an excellent source of help. Thanks for all your help.
Regards -- Sonali Dhindwal --- On Mon, 10/5/10, Justin A. Lemkul <jalem...@vt.edu> wrote: From: Justin A. Lemkul <jalem...@vt.edu> Subject: Re: [gmx-users] Learning MD To: "Discussion list for GROMACS users" <gmx-users@gromacs.org> Date: Monday, 10 May, 2010, 10:43 PM sonali dhindwal wrote: > Hello All, > > I am new at MD, and i have started doing it few months ago only. I tried to > run some simulations but taking all the parameters using some tutorials given > online and have not got very good results. > Can someone please help in suggesting what is the best way to learn MD using > Gromacs in terms of manuals and literature, what should be referred to do a > start ? > I am sorry in advance if this query irritates someone, but any kind of help > will be highly appreciable. The Gromacs manual is a fantastic resource, particularly the introductory chapters. Beyond that, have you tried Google? There are a number of great introductory-type pages that discuss some of the more basic aspects of MD. You might also find some help here: http://en.wikipedia.org/wiki/Molecular_dynamics#References I can attest to several of the books listed there (Allen & Tildesley, Leach, and Schlick) being particularly useful. Beyond that, hopefully a supervisor or colleagues will have some expertise and can recommend the requisite reading material. -Justin > Regards > -- > Sonali Dhindwal > > -- ======================================== Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
