those are supposed to be in a parameters file. If not, look for some published paper about dynamics with a system that has those same atom sequences you listed. Maybe there's even a paper related you your actual research and it has the parameters you need.
==============Original message text===============
On Tue, 11 Jul 2006 13:14:32 EDT "ARGYRIOS KARATRANTOS" wrote:
Hi all,
according to the manual the proper dihedrals are set, using in the topology
file(top file) the inner two atoms of the dihedral. But how i can set the two
following dihedrals, which have the same inner atoms
C-O-C-H
C-O-C-C
but different external atoms, and of course different K values(KJ/mol)
Argyris Karatrantos
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