Those parameters should be in **bond.itp file, and you can use four atoms to define a dihedral angle. You can check ffoplsaabon.itp. I am confused by that note as well.
On Tue, 2006-07-11 at 13:14 -0400, ARGYRIOS KARATRANTOS wrote: > Hi all, > > according to the manual the proper dihedrals are set, using in the topology > file(top file) the inner two atoms of the dihedral. But how i can set the two > following dihedrals, which have the same inner atoms > C-O-C-H > C-O-C-C > but different external atoms, and of course different K values(KJ/mol) > Argyris Karatrantos > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
