External Email - Use Caution I apologize! I think I have just realized that I can create one base based on 4 time points, right?
recon-all -base <templateid> -tp <tp1id> -tp <tp2id> -tp <tp3id> -tp <tp4id> -all Thank you! Eszter Boros <boros.eszter0...@gmail.com> ezt írta (időpont: 2025. jan. 17., P, 12:55): > Thank you for the quick response! I appreciate it. > I am not sure what you mean by rerun specifically. Should I rerun separate > analyses for 0-6 months, 0-1year, and 0-1.5 years? Or can I analyze all of > them in the same model? > I do not think I should rerun 0-6months if that is already analyzed, right? > Thank you! > > Huang, Yujing <yhuan...@mgh.harvard.edu> ezt írta (időpont: 2025. jan. > 15., Sze, 16:20): > >> Here is the tutorial for longitudinal processing - >> https://secure-web.cisco.com/15H1lCCgBPzjRd89RtWHk9KzzXEM40qS4p5I4M8lLImOuILgk9B2URL3DUZcCGz6YEq5oacf5Nj2RpX0eQkDbqxV4PjEohumGH0gd3YamnnV5d-nLHWPquKo9tU8Uo7kq_umH14-6v9qKUmsJelShkrsI4WlFL8vRp5PjRNlcPS8ZOvYdesO-AqZgMyJmEtm_QOWDyJxZJCLz8DDdINaGy3rGaTjQTu5cknKbGlhOrxDO_75AymtC3xHgaloIN6C2cwaMu7qxR40P7dYtSmWlD42vFTV5u2mXCYBaxPmwjh-GpJuj8XLSASmlPcTOVm3FCDrZ7QuE6ou82H_-KwR6OA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FLongitudinalProcessing >> >> >> >> The 'base' and 'long' steps of the longitudinal processing should be >> re-run after adding new timepoints. >> >> >> >> Yujing >> >> >> >> >> >> *From:* freesurfer-boun...@nmr.mgh.harvard.edu < >> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Eszter Boros >> *Sent:* Wednesday, January 15, 2025 1:52 PM >> *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >> *Subject:* [Freesurfer] longitudinal analyses, more than 2 timepoints >> >> >> >> * External Email - Use Caution * >> >> Dear FreeSurfer Team, >> >> >> >> We are analyzing some longitudinal data (baseline [0], 6 months, 1 year, >> 1.5 years) using FreeSurfer 7.4.1. >> We already analyzed two timepoints (basline[0] and 6 months) but now we >> are trying to look at 4 timepoints in total. >> >> I was wondering what the best way would be to do this. For the >> longitudinal processing, should we create 3 bases/within-subject templates >> between 0-6 months (this is already done), 0-1year, 0-1.5years), or between >> 0-6months, 6months-1year, 1year-1.5years. Or both? >> >> Also, is it okay to correct/edit only the bases? >> >> >> After the longitudinal processing, can we create a Longitudinal Table and >> apply the two-stage model (LongitudinalTwoStageModel) method? Or because of >> the 4 time points, we need to apply something else. >> >> Thank you for your help in advance! >> >> >> >> All the best, Eszter >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://secure-web.cisco.com/1VnOtHaDxJ2OrtICt27VxI5KsyGvyE4zZcz2geKvcTAKUof6rO3vnrbF7KAgMEdSadh45yNODJkIx7QLyN5fM0URYq4ymEs4DR0wUG-QVEaxZ2cHHCdMOlEzWz_RtJPbRM2t27l4o2Mc8vbLGySyjSYDier4sjpneTwN5q_PK-U_NAtH9iQ5HQj9ZxkHdl_Yb5Vhf4nbUn7fS5pSA3WcOOOrPqRTfzf46dKXDiOLLiH6yBlnTOtakQZsojCRaU0DWAtzeOlozZ9bFVPrmyCLd74EdYE6u77c9HWYLW8X3MC8G6B0I2Tv1UERC8_W6S6fdxp76jxQjjgxNs8nw2Z-0PQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer >> The information in this e-mail is intended only for the person to whom it >> is addressed. If you believe this e-mail was sent to you in error and the >> e-mail contains patient information, please contact the Mass General >> Brigham Compliance HelpLine at >> https://secure-web.cisco.com/1onxNuFESdAX_xYJxmT4easbFRV652AbsGLW8n0ac7H2FlQlDtDNZXRLq0Xfcnwo3CxeYN0I-DV8OLqSEwrfez7i5rZXML8bI-F0iitXiA4t7Vg0jHGn0b76eB1BQLvwsLbP5Nm3xNOBEMynlqxrF8KsR3QZ3qbmelNpznRwIrcNugxcppF3_cOVgq7jRhCy6yWfPtwVD_7o4u7-MY6kvbSBeVEQDTcljugxcJU2rpfy_w2VgS8yDAtnj2yZsqlonJQ3hc5_02VEhDJ48MY0UWN5AKd0nA54RGm74-mi_eM_WOXnLVpJ0Vb8m0dcHURLGFSyA6SE57h2ptU796yU0ig/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline >> < >> https://secure-web.cisco.com/1onxNuFESdAX_xYJxmT4easbFRV652AbsGLW8n0ac7H2FlQlDtDNZXRLq0Xfcnwo3CxeYN0I-DV8OLqSEwrfez7i5rZXML8bI-F0iitXiA4t7Vg0jHGn0b76eB1BQLvwsLbP5Nm3xNOBEMynlqxrF8KsR3QZ3qbmelNpznRwIrcNugxcppF3_cOVgq7jRhCy6yWfPtwVD_7o4u7-MY6kvbSBeVEQDTcljugxcJU2rpfy_w2VgS8yDAtnj2yZsqlonJQ3hc5_02VEhDJ48MY0UWN5AKd0nA54RGm74-mi_eM_WOXnLVpJ0Vb8m0dcHURLGFSyA6SE57h2ptU796yU0ig/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> >> . >> >
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